YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-34
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNIFLFLVL LSIGVCSAQK AFHSRRLGTE GQIVGRILSE YDSSSRPPVR DHADNSAILV  60
   61 ITNIFINRLI WHNNYAEVDL YLRQQWQDSR LKYDVDTREG IDEIRLPGNR KIWEPDTYFT 120
  121 SGKELSRNEK NSKHIVVEPS GYIRSSERVL LELPYAYGTM FPFTNSRQFT IKLGSYNYDI 180
  181 DDIVYLWANS PPLVNPIEVS QDLLKGDLTF EEASAGDCVG NYTVGVYSCI DAHVYFSAST 240
  241 ISGLMSWFLP SLFLLIGSWL HFWIHGSWSV PRTISAAVPF FILAAYYIFM REDSYTQAQG 300
  301 AWLAFCLVLT FFSFVEYFLV ICCGGRRSIR YKTLGPQEDH PMGAAKETVE VAYNEGCASF 360
  361 RDNNGIDVIS RVAFPIVTIV FLIIYFIFIV

Type	Start	End	Confidence
Signal Peptide	1	18	0.99
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	242	0.99
Transmembrane Helix	243	263	0.92
Cytoplasmic	264	269	0.83
Transmembrane Helix	270	290	0.91
Non-Cytoplasmic	291	299	0.90
Transmembrane Helix	300	322	0.93
Cytoplasmic	323	367	0.98
Transmembrane Helix	368	389	0.93
Non-Cytoplasmic	390	390	0.99