YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mom-5
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	16	0.99
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	229	0.98
Transmembrane Helix	230	251	0.95
Cytoplasmic	252	262	0.82
Transmembrane Helix	263	283	0.92
Non-Cytoplasmic	284	315	0.93
Transmembrane Helix	316	338	0.88
Cytoplasmic	339	352	0.79
Transmembrane Helix	353	372	0.93
Non-Cytoplasmic	373	396	0.89
Transmembrane Helix	397	419	0.93
Cytoplasmic	420	445	0.93
Transmembrane Helix	446	470	0.87
Non-Cytoplasmic	471	516	0.96
Transmembrane Helix	517	537	0.87
Cytoplasmic	538	568	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRHILILFL FGCLSADQRL SSTSISSMNG FSTTRKCEHI TIPMCKNLDY NQTVFPNLLG  60
   61 HTTQSEAGPA IAQFNPLIKV KCSEDIRLFL CTVYAPVCTV LEKPIQPCRE LCLSAKNGCE 120
  121 SLMKKFGFQW PDQLDCNKFP VTDLCVGKNS SESSNSKKSS NDVTFGVSTI ANEVVLSPKK 180
  181 CPHHMHTTSG SHFSLPLLSG RLPECSLTCE ADNQVPMMFD GRVRRILRIW TAAWSVACFV 240
  241 CSLFTLVTFL VDLSRFAYPV RPILYLAFCY LAISTVYMIG VVGEDGFACG TYGSTPTTLV 300
  301 TQGGENVGCS ALAVVHYFFF MSSCAWWLVL CLAWFLAANL KWGAESIAAL SPYFHAMCWG 360
  361 VPAVLSVTVL VTNSVDGDVF TGICSVGNLN PSALVYFFFT PIVVSLALGA VLLVCGIWSM 420
  421 IRIRSYIKLQ HADVERNISK LEKLMLRIGA FAIMYSLPTA MNAAIMWYQA VNMPAWLEGW 480
  481 LHHRCVRLQD RELFGFTYPV DDCPMDPKVA APEIIVFLLK YVSQLVVGIT CAIWVVSSKT 540
  541 LSSYHKAYLA LSSRSPTVPA HVDQVNMR