YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE13976
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.59
Transmembrane Helix	16	35	0.79
Cytoplasmic	36	40	0.60
Transmembrane Helix	41	66	0.82
Non-Cytoplasmic	67	95	0.80
Transmembrane Helix	96	117	0.86
Cytoplasmic	118	122	0.81
Transmembrane Helix	123	143	0.90
Non-Cytoplasmic	144	150	0.72
Transmembrane Helix	151	173	0.87
Cytoplasmic	174	182	0.71
Transmembrane Helix	183	206	0.87
Non-Cytoplasmic	207	215	0.80
Transmembrane Helix	216	235	0.95
Cytoplasmic	236	278	0.89
Transmembrane Helix	279	300	0.84
Non-Cytoplasmic	301	315	0.79
Transmembrane Helix	316	337	0.81
Cytoplasmic	338	348	0.83
Transmembrane Helix	349	370	0.91
Non-Cytoplasmic	371	376	0.76
Transmembrane Helix	377	397	0.87
Cytoplasmic	398	414	0.65
Transmembrane Helix	415	435	0.89
Non-Cytoplasmic	436	442	0.77
Transmembrane Helix	443	465	0.94
Cytoplasmic	466	482	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIQTLFTLH CLYRTFFNLK VAFFLGSAGL TMMLLNNYYR FIVLLVGFLC LASLCSNYLI  60
   61 INFTFICMKH DFSDGFTEIN GTRQSIYDYT PDDKKWILWA VAAGTIIGTV PMNLLLVKYG 120
  121 ARFPFFLSGI VSCISTSLIP FAAKWNFAFL IILRFIQGFS FSADFAAIGL LAVRWAPLAE 180
  181 TAIFVAVLTC FNAIASMITN MATGLICVSS LGWKWSYYLH SIVGAILFVL WYFVYIDHPQ 240
  241 DTRRVSGKEL QSIQKNKSEA HLSKKCDVPY IKLATSPVIL CVWANAFFDL TAAIMFSTYI 300
  301 PLYLHEVLKF GVTETGFYSS LIHGICLPVR LCFGIISDKI QFISEPVKIQ IFNTISVGGS 360
  361 GLFFASIGLI PMEYRGWSVF SCIMTMSCIG VNPGGFYKVA VLHSRQFAHV VLTAIQWIKC 420
  421 LALFVAPALV SIFVTNESIR QQWIWVFLIV GGGMVITNIL GFFFLTDKPA EWTDTDEPLE 480
  481 KL