YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ptr-16
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	180	0.70
Transmembrane Helix	181	201	0.90
Cytoplasmic	202	212	0.58
Transmembrane Helix	213	237	0.86
Non-Cytoplasmic	238	243	0.61
Transmembrane Helix	244	266	0.83
Cytoplasmic	267	286	0.77
Transmembrane Helix	287	308	0.70
Non-Cytoplasmic	309	315	0.67
Transmembrane Helix	316	341	0.81
Cytoplasmic	342	608	0.86
Transmembrane Helix	609	633	0.71
Non-Cytoplasmic	634	637	0.48
Transmembrane Helix	638	659	0.85
Cytoplasmic	660	665	0.60
Transmembrane Helix	666	688	0.81
Non-Cytoplasmic	689	708	0.66
Transmembrane Helix	709	731	0.82
Cytoplasmic	732	740	0.43
Transmembrane Helix	741	762	0.90
Non-Cytoplasmic	763	881	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNLLRRDYL DGVDSLAEYL QYNFTVPCSG VRGENKLECS FSDLCSGQCN DNQKYLNKLR  60
   61 SNNEKNLQVI PLFNLIYRNA SSRLHPNFRL TYPTMHLYND EYYVGEHFAG VKIDPNTNVI 120
  121 SRVKVVVLYF RTDRQTTEVS QVLNNWETSL FDYVENFDHP FLNMTVNSDA MIAREVRTNG 180
  181 MTCVPFFSFS VAAVVIFIFA TNSREHFVFS HNVVMAILGI AGPLMATGTA FGFLFLFGFP 240
  241 FNSITLVMPF LIIGVGCDDV FIIIHAMRKT DKSESLEDRI AETMEEAGPS ITVTSATNCL 300
  301 SFAIGIATPT PAISLFCLYT CVAVAVDFVY QLTFFVAVLV YEEKRLMKLQ KVGEEKKIEA 360
  361 AMERRPKQVL SIQNSIRSTA GAHPPPANPN GIVSRYCRFL KDWKTRLCLL LVLCGYWTAS 420
  421 YYGCKTMEIK MDTTNLIMND SPLNHIAWIY ERFLWSEGQL VMVFVNNPPD LTKSENLHEV 480
  481 LELVNRFETL PYSMGKNSTS IWLRSFLYQS SLYHNNKGFN GLLQEWLEDS EGGGARWNDM 540
  541 LRLKKDENGT ILGIDKFMFA TACAMGDDAN WSTREKLQKQ WRGVAHEYEH FNVTVFQSYS 600
  601 FYIDQLDSIG ATTMSTVIWA AITMDLACLL MIPGINSILT STIAMISINI GVFGLLSMWR 660
  661 VNLDPITMCT TLMSIGFSVD FTAHISYHYY RNPTSWTTDE RLADALKSIG WPMIQAASST 720
  721 VLCIFPLMFN TSYMVWVFVK TILLVTVLGL LHGIIFLPAL LLTSGDLSRL FGGDSIQPEK 780
  781 PEKLGEISQA SSFSSGNSET ALVKSNSTEL RTLPQERGSE KTKNFLNKNS QKINLQTFFG 840
  841 AANEKNLLKL QNWPKINNLA LKKRVFLGKM SENFDKLCVK L