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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: pgp-10
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNEKNKNES TNKTNEIGNA EKKEEAETED KKSLKSMIYP IEPSTLYIDD LKNSKKAYDV  60
   61 TMDDPLDKSS DSKPKLGFFE PYKRLYAFAD SIDMQLMAMG LFSALLQSAL PPFVWLIMGN 120
  121 FVSISILREE GKLGLKNLTS DYPIDDQFAH SATPAFISML GLSIAMFIAA FCQRIAWEIS 180
  181 SIRQVFRIKK AYIRKLLLMD ISWLESRQSG HVAAMLQESA DSIYNGISDH LPMVVFILSY 240
  241 LLVNIGVCLY IQWDVTLFMC LAIPLLIISR ILYSKWFANT MEEETKLQNK ITNLVNETFN 300
  301 CITTVISFAA QKQKINKFEK LSAEHSKLTE ERLRSSVVFD SLTQILLTEL IFTGALCYGI 360
  361 WRVADNSPGR LCALAINMLY MCVTSISIGF HMNGATRAKD NAKEICEVLN EQPKIEVELA 420
  421 SIDNNIDYVP VTRCKYRRQS MKFMGKGALH FRDIHFSYPS RKETEVLRGI SFKVEAGEKI 480
  481 AIVGSSGSGK STLTALLLRF YDPTKGAILL DGENIKTMCP DDLRGQCSLV SQEPVLFDGT 540
  541 ISDNIRYGRL DATQQEINDA ARKVGAWKFI NSLPDGMQTR VGERGHQLSG GQKQRVAIAR 600
  601 AVIRKPIVLI FDEATSALDN IHEEEVNAAI DLASEGLTTI TIAHRLSTIK NSDRIIVLHE 660
  661 GKIVEEGVPD ELIADANGIF HKMYNDQRLD QLTQQHQQLH QQQAKPPSLQ QQMSFSPPPN 720
  721 MDPDQQRRAW ARSSLGGNKK LGKSYSVNSM EKEKLKLPVM SKKKSERLDY KYSKVHSMDV 780
  781 KQHTDSMHDD DDLPGKETNF TVLKDLIYSY RTGLPLLAGA IPTTIVRAVF YLLICFQVAS 840
  841 VLEISIAPDE ERALQIFIVA AIYTALIIVK TIFEALGRIF IALYGHGFCK FMRNEMFRKV 900
  901 LRHGAAYFDE ERNSPGRLVH KVINESSTLN EIMEQKLDML IPGVVCSLFS IVCALWINWK 960
  961 MALLCSFQFP AYFVIRILQI REGTKRQRQM VDEEKKAANL ASVVLANMST IKAYNLQSHF1020
 1021 YNVFCDALKP VSQCMQKQSL ISALVFACQY SFTYILIAIT LHFGKVMMLA NEISVFDYMR1080
 1081 VVLLTQFGAN FFSQLIASVS DFTKAQIAAE NVMRVIREPP VDMDNLSEEG LRPKLEGNLC1140
 1141 LKDVSFRYPS RPIVPVLTNL NLKVRGGESI ALVGPSGSGK SSVISLFQRM YNATDGVVII1200
 1201 DKYNIKSINP AYLRRCIVQV GQEPDLFSFT IKENIAFGMM ESEATIDKVI EAAKIADIHN1260
 1261 FITSLPQGYD TEVGEFGAQL SGGQKQRIAI ARAIIRKPTV LLLDEATSAL DSASEREVQN1320
 1321 AFERVKRSTK TQCTCIQIAH RLSTIRNVDK IYVIVHGEIA EEGSHEQLIN LKGIYYEMNQ1380
 1381 MT

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle