YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	unc-29
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTNRLSWIL VLSVVIFLVI INTINASDDE ERLMVDVFRG YNSLIQPVRN SSELPLIVKM  60
   61 ALQLVLLINV DEKDQVMHTN VWLTLQWHDF QMKWNPVNYG EIKQIRVSPD KVWLPDIVLF 120
  121 NNADGNYEVS FMCNVVINHK GDMLWVPPAI YKSSCIIDVE FFPFDEQVCT LVFGSWTYNE 180
  181 NEIKLEFVQA ELVDVSEYSA SSIWDVIDVP ASLVNKRSRI EFQVRIRRKT LFYTVVLIIP 240
  241 TVLMAFLSMA VFFLPTDSGE KITLTISVLL SIVVFLLLVS KILPPTSSTI PLMAKYLLLT 300
  301 FVLNVITILV TVIIINVYFR GPRTHRMPQW VRVVFLQFLP KLVCMKRPKS ASERSAVRSG 360
  361 MAQLPGVGQF TLSPSAHHPL CPSADDRTTT IRNTASNETS AYYPLSTDAL RAIDAIEYIT 420
  421 EHLKRDEQHK SFRDDWKYVA MIIDRLLLYV FFGITVGGTC GILFSAPHVF QRIDQQEMLD 480
  481 RLKEKYDTAS NIP

Type	Start	End	Confidence
Signal Peptide	1	26	0.96
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	230	0.98
Transmembrane Helix	231	254	0.94
Cytoplasmic	255	261	0.91
Transmembrane Helix	262	283	0.92
Non-Cytoplasmic	284	296	0.84
Transmembrane Helix	297	319	0.94
Cytoplasmic	320	445	0.98
Transmembrane Helix	446	469	0.90
Non-Cytoplasmic	470	493	0.97