YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE13042
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.95
Transmembrane Helix	18	40	0.87
Non-Cytoplasmic	41	74	0.95
Transmembrane Helix	75	96	0.92
Cytoplasmic	97	103	0.88
Transmembrane Helix	104	124	0.95
Non-Cytoplasmic	125	130	0.81
Transmembrane Helix	131	153	0.88
Cytoplasmic	154	162	0.76
Transmembrane Helix	163	186	0.90
Non-Cytoplasmic	187	195	0.79
Transmembrane Helix	196	215	0.95
Cytoplasmic	216	253	0.94
Transmembrane Helix	254	277	0.77
Non-Cytoplasmic	278	289	0.62
Transmembrane Helix	290	309	0.85
Cytoplasmic	310	323	0.89
Transmembrane Helix	324	345	0.94
Non-Cytoplasmic	346	351	0.85
Transmembrane Helix	352	374	0.90
Cytoplasmic	375	384	0.85
Transmembrane Helix	385	409	0.84
Non-Cytoplasmic	410	417	0.87
Transmembrane Helix	418	440	0.91
Cytoplasmic	441	466	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQSSIHSEK MCLPKLPYYR FIVMMVAFFC LMSIFSNYTI MNFAFICMKN DMQGAVQGAN  60
   61 GTLQSIYDYT STGKAQLIWA VAIGTIIGTV PYNWMYVKYG AKNVFLSAGI ISLVATSCTP 120
  121 FAAGNSYWLL LAIRLIQGIA YAADFAVIGI ICVKWAPHDE VAFFVSVLTV FSPFATVITT 180
  181 AVTGFLCTSS LGWRFSFYVH SIAGALCFVL WYFVYSDDPL SHSSVTSREL ANIQKGKSAA 240
  241 HFSKRREIPY LKMITNSALA CTWFNAFMDL SMSIMIITYS PIYFHTIEQT AFIIGITNFA 300
  301 QLPFKFGAAF ISDRITSINP KAKMLIFNTI SCGIVSILFG GLGFISKDQK WVAMFLLIAV 360
  361 NCLMSTNCAG FYQCGRHVSQ QFADVVIAAI QFCKCLALFF VPAIVAATVT DESDRGQWSH 420
  421 AFLVMSGLLL VANFSAYFFF TDQPADFTKC EEPHEFPLKK SIEAHD