YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE12672
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.95
Transmembrane Helix	38	61	0.82
Non-Cytoplasmic	62	88	0.89
Transmembrane Helix	89	110	0.93
Cytoplasmic	111	117	0.82
Transmembrane Helix	118	141	0.86
Non-Cytoplasmic	142	148	0.67
Transmembrane Helix	149	170	0.85
Cytoplasmic	171	176	0.72
Transmembrane Helix	177	198	0.86
Non-Cytoplasmic	199	209	0.80
Transmembrane Helix	210	230	0.93
Cytoplasmic	231	272	0.95
Transmembrane Helix	273	292	0.93
Non-Cytoplasmic	293	308	0.79
Transmembrane Helix	309	328	0.88
Cytoplasmic	329	342	0.95
Transmembrane Helix	343	364	0.91
Non-Cytoplasmic	365	369	0.85
Transmembrane Helix	370	390	0.92
Cytoplasmic	391	406	0.79
Transmembrane Helix	407	428	0.89
Non-Cytoplasmic	429	438	0.74
Transmembrane Helix	439	460	0.93
Cytoplasmic	461	485	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTADKVAPLP QKGVAVAIPD TKSSNDDSKD QPGYVRYLIM ISTMLCLTSL MSNVVCFNFT  60
   61 VLCMPGSGET GELVGNRTHF VGYTRQEKTV LLSTVAIGAV CGVFPVIIGI SKLGLKKVFM 120
  121 TSGVLTAIST FLIPILAPLH FHLFIMLRFV QGLSYAACFP AVGAITSSWA SLAQQGLFIA 180
  181 ALTTFGQTSS IFSMPVAGEL CTSVFGWKSV FYLHAIISLV VFTIWFALFT DSPEDNKLVR 240
  241 PAELAEIEFG KSEDEIHEHS NTPYLEILTT PSVWGIWIGA FGDLIAVQLI HIYSPVFLHD 300
  301 VGGYSFEKTG FAAAVPVLFQ FFVKMFAGHS SDKVHGISET TKLRIYNTIA LGASAIFLVS 360
  361 LGFVKQGQGV LGLVLMTLAT GMFGFNGGGF SKCAALVSRQ YNHFVMAIQQ ILVCLSMIVC 420
  421 PIIVSTILQH GTTAEWRIVF FVHAAILLIC NAIFCWLATA KPAPWTDRTI KHSATKNTPL 480
  481 YQTKV