YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE11406
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.90
Transmembrane Helix	11	29	0.94
Non-Cytoplasmic	30	48	0.80
Transmembrane Helix	49	71	0.91
Cytoplasmic	72	80	0.94
Transmembrane Helix	81	101	0.91
Non-Cytoplasmic	102	106	0.83
Transmembrane Helix	107	127	0.93
Cytoplasmic	128	146	0.88
Transmembrane Helix	147	168	0.92
Non-Cytoplasmic	169	185	0.87
Transmembrane Helix	186	206	0.95
Cytoplasmic	207	258	0.93
Transmembrane Helix	259	277	0.87
Non-Cytoplasmic	278	284	0.82
Transmembrane Helix	285	307	0.91
Cytoplasmic	308	316	0.82
Transmembrane Helix	317	338	0.87
Non-Cytoplasmic	339	374	0.92
Transmembrane Helix	375	398	0.87
Cytoplasmic	399	417	0.89
Transmembrane Helix	418	437	0.89
Non-Cytoplasmic	438	443	0.84
Transmembrane Helix	444	464	0.92
Cytoplasmic	465	477	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIIIETSWD VVYLCGYFSL VVYFQYAIFT TIMYTYMTKL DPSVGPTSFG LAVTLHGIGH  60
   61 CLGALAAAWW TKKRYKGKKP MCVGYLLMLL SNCLFLLADH VPAETSAFYI MLCRFLGGLG 120
  121 MGNTSTLRTT LTAHSMSDDR AKAMSVFIGG RALGLILGPG LQLIFLFLGD TGLQLIGPLH 180
  181 IHSHNAAAFI SIVLNISAIV ALFTVYHEIE RNGNSCSQRS VVSVFFHFHE KSLQEDDENW 240
  241 PRPDKLAMFV CMLTRYCQNF TYYAIETLAP AFMMMMFNME RDSAVGTMSI IFFIAGVFAL 300
  301 SLYSTFVFTD VARKLNIGKV NTISLIIFII YVLTTYQWPY IPTNVVVNTD GTHGGCDYSL 360
  361 YSWCLGLPKT SQAFFYIGYI IAFGGCVPFI NVGDATLYSK LFNPVGQALE QSLYDVSQVF 420
  421 ARVVAPVLCT AIYASFGPQR VWELLFAQLV VVTALWIAFA HRMIPLRPKP RPVFYLE