YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	nhx-6
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	48	0.96
Transmembrane Helix	49	67	0.58
Cytoplasmic	68	75	0.51
Transmembrane Helix	76	99	0.86
Non-Cytoplasmic	100	109	0.49
Transmembrane Helix	110	129	0.85
Cytoplasmic	130	135	0.52
Transmembrane Helix	136	163	0.79
Non-Cytoplasmic	164	172	0.48
Transmembrane Helix	173	195	0.76
Cytoplasmic	196	202	0.46
Transmembrane Helix	203	226	0.63
Non-Cytoplasmic	227	245	0.72
Transmembrane Helix	246	270	0.88
Cytoplasmic	271	278	0.67
Transmembrane Helix	279	296	0.78
Non-Cytoplasmic	297	299	0.65
Transmembrane Helix	300	320	0.84
Cytoplasmic	321	334	0.93
Transmembrane Helix	335	356	0.87
Non-Cytoplasmic	357	365	0.75
Transmembrane Helix	366	389	0.89
Cytoplasmic	390	402	0.92
Transmembrane Helix	403	423	0.86
Non-Cytoplasmic	424	430	0.68
Transmembrane Helix	431	451	0.88
Cytoplasmic	452	634	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLIRRLSVV LIGLLLILGY AQAECDEKEE EVFPSRYPIA YFKWEEVKIP MTICLWLIAA  60
   61 SISKIVFNSI PHLNDLFPDS ALLIMIGLII GIIFKLIGVD KNQFFLESEI FMLYLLPPLV 120
  121 FDAGYFMPAR QFFDNFGSIM CFAMIGTLFN FLAISFSLWA ISLTGLFSVE TPLLHMLLFG 180
  181 SVAADVDPVA VIVIFEELAV NDVLFIAVFG ESLFNDGVSV VLYRMFLTFS EIGAENLIPE 240
  241 DFANGGVSFL VVVFGGVGIG VLFAFLASLL TKYSRAEEIS ILNCVFILIL PYTCYLCGEL 300
  301 FGLSSIIAVV FCGALMRQYC RENVEQETVK ATEKFIKVLS IASETVIFVF LGLSTVSSNH 360
  361 HWDTCFIVLT VVFCLIYRTL GVVVMCHFLN KYRLNKYTKV DQFIMAYGGL RGAIAYGLVV 420
  421 AIPDFIPAKN MFVTSCIIVI YFTVFLQGIT LKPIAEFLQV EKKNVHSKNM IEHIYTELID 480
  481 TTMAGMEDIA GFKGHHWIRD SWNYFNNCYL RPVLVNKNNM KQMDKTKLVR KYKHLVDEDA 540
  541 KKIANGGDLK SNLAFTRALI EHTRSRTNTA ITSDSNGKID FVTHMKEHHG ITVYDHENNV 600
  601 EYTSDYMENE SEDGEYKNGG FESDGSSDNF EERV