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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: npp-11
Protein type: Transmembrane
Type Confidence: 0.95
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGGSAPKPS IFGGTAATTT ASSGFSFGNS STSTANTGGN TNTTGGFSFG SAQPSTGSTG  60
   61 LFGNSTATGS MFGGSSAAAP APASAGIFGN SGAAAPAPAS TSIFGSSANS AAPATVTFGA 120
  121 SAPSAGAGMF GANKPAAPTG GLFGSSTSTA TTAPTGGLFG SSTAAPSSGL FGSTAAPAAP 180
  181 GGLFGSTSTS TAAPSGGLFG SSAAPTSTAP APSGGLFGAA PATSNAAPTS GLFGNSAPAA 240
  241 TASSGGLFGA APKPAAPSGG LFGSTAPATT AATTTATSGL FGAPTSAPSS APATGGLFGA 300
  301 STAPAAATGG LFSIGAASAS TPSVGLFGNS SASTTAAAAP ATAPAAASTG GLFGATTAAA 360
  361 AAPTSSTTGG LFGSTAAAPA ASLPTGGLFG SSTPAKTPAA PTAGLFGASS TTTTSAPATG 420
  421 SLFGTAPATT TATSAAPAAS TGGLFGASST TTPASTAPTG GLFGAATTTA PAAAAPTGGL 480
  481 FGAATTTAPA TVGPTGGLFG AATTTTPATA ATLGQTPSTV SATPSLPTTT STTSTLPKPA 540
  541 EATPTLGLGL GLTSTPLAKG TGWTTSGLKG AATTSAGLKI GASGSDTLSE EEIKAGLGGN 600
  601 DTKAFFTALQ EVVNSYHSEI AKQERVFHNK MLELNAYDRE LITLEPKVLG LYNEMDDLSG 660
  661 SCKKLHFNVA SMTSVLNDIE QNVVELENKL SLPEWHTLDY KFPLDSRFAS RHDVQRVQIA 720
  721 QMMLNVDSQM KCADFDLDQI TKSLNTMQST VLKTKTETPL EKTELIMKKQ LQKLMDLSTQ 780
  781 HDATRDKLNK LKDDHNLKTN NSSKA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle