YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE10408
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.63
Transmembrane Helix	8	26	0.64
Cytoplasmic	27	44	0.84
Transmembrane Helix	45	63	0.90
Non-Cytoplasmic	64	96	0.91
Transmembrane Helix	97	117	0.93
Cytoplasmic	118	124	0.81
Transmembrane Helix	125	146	0.90
Non-Cytoplasmic	147	154	0.66
Transmembrane Helix	155	176	0.90
Cytoplasmic	177	185	0.79
Transmembrane Helix	186	208	0.92
Non-Cytoplasmic	209	217	0.85
Transmembrane Helix	218	238	0.95
Cytoplasmic	239	278	0.93
Transmembrane Helix	279	298	0.80
Non-Cytoplasmic	299	313	0.74
Transmembrane Helix	314	334	0.85
Cytoplasmic	335	348	0.90
Transmembrane Helix	349	369	0.94
Non-Cytoplasmic	370	377	0.72
Transmembrane Helix	378	398	0.92
Cytoplasmic	399	405	0.87
Transmembrane Helix	406	424	0.94
Non-Cytoplasmic	425	441	0.75
Transmembrane Helix	442	462	0.96
Cytoplasmic	463	473	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINNNSKILF HMIFDSISTL ASATFSKRTN VRHISSFVFF HKTRYLIMIL SLLCMTVGQM  60
   61 NSLSFNFTVI CMEDVVVDFH SNNRTDLHWL EDPSQKSWIF SGVAIGAVIG LLPLVPMLDN 120
  121 IGLRITFTLF GIISAASSLL FPLSVHMGFY AVFIVRILQG IGTSILYTVV AYIPGIWAPK 180
  181 TEMGTFLAVL SCGFQLSNII CMPVSGILCE SDWGWRPIYY IFGSLTILVY MVFFFLYADA 240
  241 PKNHFHVSSK ELSMICAEKK PKKGKESVPY RAICFDKCVL ATWLSMCGRN VAFYVLVLYG 300
  301 PTYLREVLHF DVKGTGWAAA LPFVSCAIVK FASGQLTDRL TMFSEKTKFV TCTLISMIGL 360
  361 AAGFVVMSLT SSRTIAQISY TFAVTLSGIT IMGTVKCLQL RCQQHVHFAT VVVAFMACIW 420
  421 QFLVPLGVGY LCPNNTPEEW SFLFFIVSGI VLIVNIPFPF LTTAEAADYA KRF