YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE10118
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHFCYHFRL FFFSFKTQTD YITTTYFTLL NSFISTKIMS SLGYFEFAAS VTHLVGFITV  60
   61 CLNGYFFNTF YNGIGWPFEL KVGSTDARGL VEMRGKQLHG FLMFLGFIYL QGEALLSYRV 120
  121 YRFTTNRVSI LIHTFLHIAS IVLAVGALFS IILTIKYTGA SHFSNIHSYL GVCLLLVYSG 180
  181 QLSFGFCTYL FKCTPKDYQS RLMPVHRAVG ISCMVVACVQ CCLGYNQMVS GKLSCFKDLS 240
  241 CANRIEYVGS LSMIFNIIYT IMVVSVVIPK PWRREKETIK IN

Type	Start	End	Confidence
Cytoplasmic	1	46	0.68
Transmembrane Helix	47	67	0.91
Non-Cytoplasmic	68	97	0.92
Transmembrane Helix	98	121	0.84
Cytoplasmic	122	132	0.84
Transmembrane Helix	133	155	0.91
Non-Cytoplasmic	156	166	0.85
Transmembrane Helix	167	191	0.88
Cytoplasmic	192	204	0.91
Transmembrane Helix	205	227	0.87
Non-Cytoplasmic	228	247	0.90
Transmembrane Helix	248	269	0.88
Cytoplasmic	270	282	0.90