YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	del-3
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.54
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLRGLFGGL FFLFLLCSCV ALFVLHSLYF IFRTASQTEK TESKTVHDDQ LFIPALVICN  60
   61 RMPFSQDGLN NVNVNLRQDS ALRYLLEWTN PSLREAADYV APSADLMNQG QNTVLQYITQ 120
  121 STRNQTIQNM QYQCQSVINS CTYQGIQLSS FDCCRNLLSM IPSTNGLCWV WKDSTMWQNS 180
  181 TGINRQFSIT FQMTRNSWFS TYVPTHPGVD IYLREDGNDV MRMATELENP IRLLDKRGVR 240
  241 LQMRKTKKAD IRRTSCGYAL GDARRSDEHA FKNNHTNYLM CNMLVAMRYC SCHPLMAELI 300
  301 HYDPSSYRDF LLRVTQTSVC SVDAYDNCAR RYIDLTRIEN WEEDIPKDLP GYEDAKKCRN 360
  361 DNQRSCLITS YPGTIEGYDL PEEYRTTQDY VSRLVLEYST MRTTEILVSK DPNIYELLSF 420
  421 IGYNMALWFT VGHILWSMFW YATGLCCPKR QSSNRISPEI RRKRSVSSPE PIVVEHRPSQ 480
  481 DVASGDT

Type	Start	End	Confidence
Signal Peptide	1	21	0.67
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	424	0.96
Transmembrane Helix	425	445	0.71
Cytoplasmic	446	487	0.77