YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ptr-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.78
Transmembrane Helix	21	46	0.75
Non-Cytoplasmic	47	267	0.83
Transmembrane Helix	268	291	0.85
Cytoplasmic	292	300	0.72
Transmembrane Helix	301	324	0.90
Non-Cytoplasmic	325	331	0.73
Transmembrane Helix	332	354	0.90
Cytoplasmic	355	373	0.77
Transmembrane Helix	374	397	0.74
Non-Cytoplasmic	398	402	0.53
Transmembrane Helix	403	429	0.80
Cytoplasmic	430	680	0.60
Transmembrane Helix	681	695	0.39
Non-Cytoplasmic	696	699	0.47
Transmembrane Helix	700	725	0.81
Cytoplasmic	726	731	0.62
Transmembrane Helix	732	752	0.89
Non-Cytoplasmic	753	758	0.66
Transmembrane Helix	759	783	0.80
Cytoplasmic	784	800	0.76
Transmembrane Helix	801	824	0.81
Non-Cytoplasmic	825	834	0.61
Transmembrane Helix	835	857	0.81
Cytoplasmic	858	933	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWDCVERRA ASLFRQLGFL ICDHPLPFFV FPLLFTAAMG VGLLHLNPLS DAVYLFTPLG  60
   61 AQSKMERMSI HEKWPLTDNN YIPGRAVTQS REIQVTALAR NDSNILDPKF ANAVYQLDKY 120
  121 IQTRVRVLHN GHYYSYKNLC LQYKNGGCPS NKHVHILSDL HNHGFNITYP YFRFGSEGGY 180
  181 IGSSLGGVTV MKGENETDIL ASAKAWFMIY HLKFHPEEMS YISGEWELEL GRMLTQYPED 240
  241 PYISITYFHS QTLADELKRN ADTLIPRFII SITLLIVFST LCSLSFIDGS FSIDWVLSKP 300
  301 ILSILGVVSA GIAILTGVGF LSLMGMPYND IVGVMPFLVL AVGVDNMFLM VAAVRRTSRT 360
  361 HTVHERMGEC LADAAVSILI TSSTDVLSFG VGAITTIPAV QIFCVYTGVA IFFAFIYQIT 420
  421 FFAACLALAM KHEASGRNSL FLIEAVSAEK KTSLSTFQRL FNLGSVPDHS ASHDVKQPLT 480
  481 SRFFGEWYAP VLMHPVVRGI AMVWFVIYLL GASYGCSRIK EGLEPVNLLV EDSYAIPHYR 540
  541 LLEKYFWKYG QQVQIVINNA PDLRNHTSRD RVHAMVLDFA TSKHAIGMES VQFWLFEMER 600
  601 YYQKELEVQI IDSSFYGLLH HFLASKTNNP LAEDIYWGPM PDDDNGTMVK SFRFILGMKD 660
  661 LVTTMDQTDA TMSFREVAAR WPEFNVTTFM PIWMFTDQYI IIIPNTVQNI IIALLVMIVI 720
  721 AVLFIPQPMC SLWVALACAS IDFGVIGYMT LWGVNLDAIS MITIIMSIGF SVDYSAHIAY 780
  781 GYVVSREDTA AGRVKEALSA LGWPLSQGAM STIIAVSVLA DIPAYMIVTF FKTVVLSISL 840
  841 GLLHGLVFLP VLLSIFVRGC CIIPSSPHGH PSAQKIEKQI RIAAISSSPL DLRTVAPLRA 900
  901 SSPISFPHRL EYTDESPTVH NRSKNSIKSE HLD