YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE08130
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.99
Transmembrane Helix	50	71	0.89
Non-Cytoplasmic	72	93	0.92
Transmembrane Helix	94	115	0.93
Cytoplasmic	116	122	0.90
Transmembrane Helix	123	142	0.97
Non-Cytoplasmic	143	149	0.79
Transmembrane Helix	150	173	0.82
Cytoplasmic	174	184	0.79
Transmembrane Helix	185	207	0.92
Non-Cytoplasmic	208	214	0.79
Transmembrane Helix	215	235	0.95
Cytoplasmic	236	271	0.96
Transmembrane Helix	272	293	0.88
Non-Cytoplasmic	294	318	0.89
Transmembrane Helix	319	340	0.93
Cytoplasmic	341	357	0.86
Transmembrane Helix	358	378	0.93
Non-Cytoplasmic	379	386	0.80
Transmembrane Helix	387	407	0.92
Cytoplasmic	408	426	0.79
Transmembrane Helix	427	446	0.88
Non-Cytoplasmic	447	464	0.88
Transmembrane Helix	465	489	0.90
Cytoplasmic	490	531	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRNKVAPVE DGANIQRNFE PPPPYTTPTD SPEDKIRSNS TATTASQPEF QGCWTIVVVA  60
   61 ILFIINLLNY MDRYTIAGVL NDVQTYYNIS DAWAGLIQTT FMVFFIIFSP ICGFLGDRYN 120
  121 RKWIFVVGIA IWVSAVFAST FIPSNQFWLF LLFRGIVGIG EASYAIISPT VIADMFTGVL 180
  181 RSRMLMVFYF AIPFGCGLGF VVGSAVASWT GHWQWGVRVT GVLGIVCLLL IIVFVREPER 240
  241 GKAEREKGEI AASTEATSYL DDMKDLLSNA TYVTSSLGYT ATVFMVGTLA WWAPITIQYA 300
  301 DSARRNGTIT EDQKANINLV FGALTCVGGV LGVAIGTLVS NMWSRGVGPF KHIQTVRADA 360
  361 LVCAIGAAIC IPTLILAIQN IESNMNFAWG MLFICIVASS FNWATNVDLL LSVVVPQRRS 420
  421 SASSWQILIS HMFGDASGPY ILGLISDAIR GNEDTAQAHY KSLVTSFWLC VGTLVLSVIL 480
  481 FGISAITVVK DKARFNEIML AQANKDNTSS GTLPIEDRNT EDETGSEVQH M