YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE08099
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGAINFRSL NLIFSKIYLF NFLFPLFLPF FPIIFSLAAV RFQMVRQDAG VMIGEDALSY  60
   61 CSGQSTSDSS FRTMKSTSLS SSWHSMASPH TSDVQGVSFF RPFSWFVWRQ TEKDLKKKQD 120
  121 KETVDEIMKC FRNNDVDGME KFVEKKTRES VSSMKNDEFW WDDDEISYWK HRTTPAQDEL 180
  181 PEDHKYTPHP SKGFKLPPRV LKAVRFELDN TPEDRQPRPF TPLYTSTPKN PAINEDGSDD 240
  241 EYSLVPLRYC DSNTVAVPAA VFNNTSSILL DNAVIMTTLN KSREETNEIL CKSLNRDFYQ 300
  301 LAYVDSEDAE QDHGKPEQST QNPLCNTYVV HSSEEMSSEP SSSTINLDQA NVSDDARSAI 360
  361 LGLDRVENAI QRALANQNGP EQGLARQLRE RIQSIKKSID EICSECPNGP EIDTDRVSRE 420
  421 SDHDVSADFE DSDWQPHLES DVGSFDECML

Type	Start	End	Confidence
Cytoplasmic	1	16	0.90
Transmembrane Helix	17	39	0.88
Non-Cytoplasmic	40	450	0.97