YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE07636
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.95
Transmembrane Helix	12	32	0.83
Non-Cytoplasmic	33	93	0.94
Transmembrane Helix	94	114	0.92
Cytoplasmic	115	122	0.82
Transmembrane Helix	123	143	0.92
Non-Cytoplasmic	144	151	0.84
Transmembrane Helix	152	175	0.86
Cytoplasmic	176	185	0.76
Transmembrane Helix	186	206	0.92
Non-Cytoplasmic	207	217	0.75
Transmembrane Helix	218	237	0.97
Cytoplasmic	238	271	0.96
Transmembrane Helix	272	293	0.81
Non-Cytoplasmic	294	315	0.73
Transmembrane Helix	316	334	0.92
Cytoplasmic	335	353	0.87
Transmembrane Helix	354	373	0.91
Non-Cytoplasmic	374	379	0.79
Transmembrane Helix	380	399	0.94
Cytoplasmic	400	414	0.67
Transmembrane Helix	415	435	0.69
Non-Cytoplasmic	436	446	0.74
Transmembrane Helix	447	468	0.90
Cytoplasmic	469	506	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSCDLWSL RSVRLRVVIA IALALTIEGL MRSNLNMAIV CMLNSTALTD GKPMIASLNT  60
   61 SIEPATPLCP LLQFGESKVV EHKGTIFWTS QDRAIIFAAF YAGGLVATLA SEVLNRYIGA 120
  121 TRSVLYGGIA NVVGTFLTPF VASQTNFGTF PIILLRFVMG FGQGVLWPCM LVLIAQWFPV 180
  181 NEKSTALAIA TTGNQLSVVI AMFATAELCQ LPWGWPMAFH VYAVCGIVMC IIWYMMVYDS 240
  241 PCHADKKLSR DELHYITTER VRLRPQHPNW MALMKSPVVW AIAASSFAHN YVTVGTITYL 300
  301 PLYYKTVLNM SLTSNGLWSA LPFVLQLISK VFYAGMAESA RKRDWSDINR ITKFCNSSAS 360
  361 FGIAICFGLL CLCDCSQRGA AIFLICLAMC FVSGYIPGYN TSAVTIAPGQ TAAIAAFSRF 420
  421 WGQIASSVAP YHIGAYTKQG TADEWKIVFA VIAAICVVTG IFFQCCGTAS LQDWDSTHSK 480
  481 APIEVAREEL IDSSKLDDSL RITTVE