YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-32
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHFFLFVHF FKFSIFDAKF KLPMYQLFTV LRKIHWHRAD FFKQNILSHY FIPENNLIYP  60
   61 NFLDLILKMK YRIWILLIFI PIVVLCDDCT SDEDVIADLL GRNSHSSGEI VIKSNYKIAK 120
  121 WLYNSVAHEL STEGFFEMSW THLYSYFQKI FQYRKFDNSK SSCQKKLLKN WKIFLKIRKM 180
  181 LSLSRNVYII ATIYVKIYKN LHYKMCKLLF VLVRKICKFI KNRQLDRIMA GTNTTLDFTN 240
  241 LNACHKTVRI KSLLHIFWLP HVYFPFSYNL EESRNLYNIE IHESGNITLS KRLKQSIPCK 300
  301 EQSDSHPFSN NTCTLSWKYT NLDNYQKIVI EPSNLMDSVE REHSRQFILK DVTFESSGDD 360
  361 EQRLHYTITQ TPQYLLLHFF FPALLFLIPP WLSLLLGPMA ITRCIILMTS LILLSNHYDR 420
  421 NVTVFPIDAS LNAISIWQLF TYIYVIGIVI ELIIITLFAS MGRSKTCCFA KRRSAKYEME 480
  481 PLYEEMNDLR QRKTRLS

Type	Start	End	Confidence
Non-Cytoplasmic	1	373	0.89
Transmembrane Helix	374	394	0.87
Cytoplasmic	395	398	0.69
Transmembrane Helix	399	418	0.81
Non-Cytoplasmic	419	439	0.82
Transmembrane Helix	440	462	0.89
Cytoplasmic	463	497	0.95