YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sft-4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQFRAPGGQ NEMLAKAEDA AEDFFRKTRT YLPHIARLCL VSTFLEDGIR MYFQWDDQKQ  60
   61 FMQESWSCGW FIATLFVIYN FFGQFIPVLM IMLRKKVLVA CGILASIVIL QTIAYHILWD 120
  121 LKFLARNIAV GGGLLLLLAE TQEEKASLFA GVPTMGDSNK PKSYMLLAGR VLLIFMFMSL 180
  181 MHFEMSFMQV LEIVVGFALI TLVSIGYKTK LSAIVLVIWL FGLNLWLNAW WTIPSDRFYR 240
  241 DFMKYDFFQT MSVIGGLLLV IAYGPGGVSV DDYKKRW

Type	Start	End	Confidence
Cytoplasmic	1	33	0.73
Transmembrane Helix	34	53	0.54
Non-Cytoplasmic	54	67	0.75
Transmembrane Helix	68	89	0.88
Cytoplasmic	90	96	0.71
Transmembrane Helix	97	118	0.92
Non-Cytoplasmic	119	122	0.75
Transmembrane Helix	123	141	0.67
Cytoplasmic	142	162	0.76
Transmembrane Helix	163	182	0.81
Non-Cytoplasmic	183	187	0.62
Transmembrane Helix	188	207	0.85
Cytoplasmic	208	212	0.72
Transmembrane Helix	213	233	0.90
Non-Cytoplasmic	234	246	0.81
Transmembrane Helix	247	270	0.85
Cytoplasmic	271	277	0.81