YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	amt-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.95
Transmembrane Helix	31	51	0.91
Cytoplasmic	52	67	0.79
Transmembrane Helix	68	88	0.90
Non-Cytoplasmic	89	114	0.94
Transmembrane Helix	115	134	0.94
Cytoplasmic	135	140	0.87
Transmembrane Helix	141	162	0.91
Non-Cytoplasmic	163	183	0.97
Transmembrane Helix	184	206	0.88
Cytoplasmic	207	223	0.93
Transmembrane Helix	224	245	0.85
Non-Cytoplasmic	246	261	0.74
Transmembrane Helix	262	283	0.94
Cytoplasmic	284	290	0.87
Transmembrane Helix	291	310	0.95
Non-Cytoplasmic	311	316	0.84
Transmembrane Helix	317	338	0.91
Cytoplasmic	339	348	0.91
Transmembrane Helix	349	372	0.85
Non-Cytoplasmic	373	395	0.91
Transmembrane Helix	396	420	0.90
Cytoplasmic	421	534	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTPTNFTTE IDKLHAEITR LETGFYENVN SFFLCSMALI IFFMQCGFAY LEAGAVRSKN  60
   61 TTNILIKNLL DSCICIIGYW AIGWALAYGD SGEGVNLFVG HSQFFLSGFS DYPRFFFQYV 120
  121 FSATAATIVS GAVAERCEFI TYVTYCTVIS TFIYPVLTHW GWTENGWMAK GITSGIIDTK 180
  181 YDDFAGSGLV HLCGGSISFL AAWIMGPRIG KFPDDEDDES DEILGHSVPF TALGGFILMF 240
  241 GFLAFNGGSV ASISHAGDGH TVALAMINTI LSGAFAALIY LGVHYYQHGK WTLLLTINAC 300
  301 LSGMVAACAG CNKMEPWACI WVGLGAGLIY LAFSKLMIRL KIDDPLDAFA VHAGGGFWGL 360
  361 MSSSIISHGG VAYALADAVS GAKNSGDHLT QAFAQLGWQM ICALAIIAWS LGVMLPIFWI 420
  421 LKKTGKLRVS EEVEINGLDV FKHGEMAYPL RAYGHGWHDF ERANKIQAFS AKITVGEGKN 480
  481 TRIMKIHPEM SIEQLASVYD RSGNIIPMPK KSRTLFTNSA ERKMSQMMYD ENKM