YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sulp-8
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.81
Transmembrane Helix	47	72	0.59
Non-Cytoplasmic	73	73	0.39
Transmembrane Helix	74	94	0.60
Cytoplasmic	95	97	0.39
Transmembrane Helix	98	119	0.79
Non-Cytoplasmic	120	142	0.51
Transmembrane Helix	143	164	0.85
Cytoplasmic	165	170	0.38
Transmembrane Helix	171	192	0.65
Non-Cytoplasmic	193	217	0.56
Transmembrane Helix	218	242	0.86
Cytoplasmic	243	258	0.50
Transmembrane Helix	259	280	0.84
Non-Cytoplasmic	281	303	0.56
Transmembrane Helix	304	324	0.91
Cytoplasmic	325	343	0.51
Transmembrane Helix	344	364	0.83
Non-Cytoplasmic	365	383	0.47
Transmembrane Helix	384	417	0.80
Cytoplasmic	418	437	0.78
Transmembrane Helix	438	466	0.88
Non-Cytoplasmic	467	611	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEVYQPCTT TDQDIVEKKE CSPFRKKLQK YIPILEWLPN YQWKDHFHGD VIAGLTVGIM  60
   61 HVPQGMAYAS LAGVPPVYGM YSSFFASTIY MFFGTARHIS IGVFAVASMM VGAARLRLAP 120
  121 DIPISNSSDI NPSVYPLGEY VDPLVFTSAL TLLVGVVQII MGILRLGFLT TYLSDSLVSG 180
  181 FTTGAAVHVF TSQLNKVFGI KLPRHEGIGM IVRMYRDMIM SLGSVNFVAL GISIFGILFL 240
  241 DLGRTYINPI VKKFSPIPPP LELILVIFGI VISMIFNLDA EYHVKTVYEI PRGFPLPSIP 300
  301 RLNFLPALLS DAIPIAVVCY MFVMSMGKLF AKKHKYKTDA TQELYAIGIA SALSSFFPVY 360
  361 PVGASLSRSS VCEMSGANTQ LYTIFSSFLL LTVILLLGPF LEPLPMCILA CIVIVSLKSL 420
  421 FMQVKELPRL YRISKYDFAI WLVACLSTIF TDVTTGLVIS LAFSLYTLVL RQQWPSFSTV 480
  481 LHDETPRQNV PENVKIVKFA GSLHFANVTA FQDDMGEAIG KLPEEDPLID ERTIILDASS 540
  541 VAFIDIMGVD ALRDVFKDAL KLGVHVFYCG LPEDVLSVLS NDENFLSVVP PSTFFPSIDS 600
  601 CLISFVHQQS V