YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE06548
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.99
Transmembrane Helix	31	53	0.84
Non-Cytoplasmic	54	69	0.78
Transmembrane Helix	70	92	0.90
Cytoplasmic	93	100	0.87
Transmembrane Helix	101	121	0.93
Non-Cytoplasmic	122	130	0.72
Transmembrane Helix	131	152	0.90
Cytoplasmic	153	164	0.87
Transmembrane Helix	165	187	0.86
Non-Cytoplasmic	188	204	0.86
Transmembrane Helix	205	227	0.91
Cytoplasmic	228	255	0.90
Transmembrane Helix	256	280	0.81
Non-Cytoplasmic	281	290	0.81
Transmembrane Helix	291	311	0.93
Cytoplasmic	312	322	0.84
Transmembrane Helix	323	345	0.90
Non-Cytoplasmic	346	372	0.97
Transmembrane Helix	373	393	0.92
Cytoplasmic	394	412	0.81
Transmembrane Helix	413	434	0.91
Non-Cytoplasmic	435	440	0.84
Transmembrane Helix	441	461	0.91
Cytoplasmic	462	484	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPSADFDTS SLKSYTVSTS RTNLDVRKSN WTSLWFANLI QYFCGLQMSL YFTSMWPYLL  60
   61 KLDPTAQLPF FGIILASFSI GQAVGSPIFG TWTQKTESFK VPVATGLVFC CVGNILYGIL 120
  121 PTIMWEVQWL MLVSRVLIGF GAGNLSALRA YVAASSTLED RNTAVSLATG SQVTGMLTGP 180
  181 ILQTAFAFIG DGVRVFNTFD LDAYTSPAFV LSIVLIIMAV MIFFYFSEDY AGVIDEKKED 240
  241 SDVIIPPFDR RAAVVCIFLW FVIQTIAVNI ESLCSVFTIA MYNWTSHQAI VYGGYIETAS 300
  301 CALSVSQYLV IGLTRVGKID KRIQILFGCI VFCIYYVVLL PWPFYPESLL YNPNVTDGAC 360
  361 TYEWCQYVPK IPFIAYILVY VLCFGIAFPY IGNSIGTLFS EVLGPRQQGT MQGVFAFFGS 420
  421 VGRCAAPLVT TFFFNSSGYT WVSVEMLTFL IIGALSTCIF WKQMIPLELI QKKESISNNN 480
  481 NHKV