YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE06516
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.93
Transmembrane Helix	25	44	0.91
Non-Cytoplasmic	45	79	0.87
Transmembrane Helix	80	100	0.88
Cytoplasmic	101	107	0.68
Transmembrane Helix	108	127	0.92
Non-Cytoplasmic	128	138	0.64
Transmembrane Helix	139	159	0.87
Cytoplasmic	160	166	0.74
Transmembrane Helix	167	190	0.82
Non-Cytoplasmic	191	198	0.77
Transmembrane Helix	199	218	0.96
Cytoplasmic	219	262	0.94
Transmembrane Helix	263	284	0.90
Non-Cytoplasmic	285	293	0.73
Transmembrane Helix	294	317	0.72
Cytoplasmic	318	332	0.82
Transmembrane Helix	333	355	0.92
Non-Cytoplasmic	356	362	0.82
Transmembrane Helix	363	384	0.92
Cytoplasmic	385	393	0.77
Transmembrane Helix	394	414	0.93
Non-Cytoplasmic	415	427	0.74
Transmembrane Helix	428	448	0.94
Cytoplasmic	449	493	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADAVFPTQA TAQTRYISLF GTRTRFVIMV LILLCLTSIW SNILAFNFAV VCMDDDDSEM  60
   61 GASLNGTARK THFTSTQNSL AMAIVAIAAL LGNFPIVQLV GMVGIRTVFA GLGILSAVST 120
  121 LLIPLSIRMG FYYFLAVRFL QGFAFAANFP VIGSFCAKWS YFKQNGLFVS SLVAYVQLSP 180
  181 AITMPASGAL CSAFKWPSIF YAHGAVSLLL FVTYALFYRN SPQKHPFVGN VELKKISIGK 240
  241 IAAVDKRALK KVPYGPILKT PAIWAVWVAA IGNFTCVNMM FLFSPIYLSK VLGFPVHSTG 300
  301 ITAAIPPFLQ FSSKLICGAA SDRLTCLSEG VKFRLFNTLA FVGSAGFLCV LAFMGDEHKR 360
  361 NNMIVLGCAA AMLGATTGGF FKAGPVLSKQ YSHFVTGNIS LGITITMLIV PFFVNALTPN 420
  421 NTQEEWKYVF LITGAVMVIT NIFFVIFVRG DPCEWTSDSF HRASSVADFE QHHIRNTGIS 480
  481 TISHNVEDVP EKL