YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE06514
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	133	0.99
Transmembrane Helix	134	157	0.87
Non-Cytoplasmic	158	164	0.82
Transmembrane Helix	165	185	0.82
Cytoplasmic	186	200	0.78
Transmembrane Helix	201	219	0.91
Non-Cytoplasmic	220	233	0.78
Transmembrane Helix	234	255	0.84
Cytoplasmic	256	267	0.85
Transmembrane Helix	268	293	0.80
Non-Cytoplasmic	294	317	0.91
Transmembrane Helix	318	338	0.91
Cytoplasmic	339	383	0.97
Transmembrane Helix	384	402	0.83
Non-Cytoplasmic	403	419	0.75
Transmembrane Helix	420	439	0.93
Cytoplasmic	440	449	0.76
Transmembrane Helix	450	472	0.87
Non-Cytoplasmic	473	493	0.76
Transmembrane Helix	494	513	0.89
Cytoplasmic	514	523	0.71
Transmembrane Helix	524	542	0.71
Non-Cytoplasmic	543	588	0.82
Transmembrane Helix	589	608	0.88
Cytoplasmic	609	632	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHNCIDAGKT RGRGKEMEKE EKEASMSFTY IDIDSEVEST AMSERVRARH KKRVPHTSED  60
   61 VMAFEPDVDF STAGGHFPRV YLPPEHERKY SDDEDDGEYN DEDFAHLIPD PNVDPNANWF 120
  121 KRTHDTLKGD ISSILLLLFL YLLQGVPLGL IGAIPLLLSG KHVSYGSQAI FSFAYWPFSL 180
  181 KLLWAPIVDS VFSKRLGRRK SWMVPCQYLI GAFMLYLSYK VNDIMGDNGG SPNVVFLMLI 240
  241 FLPLNFLAAT QDIAVDGWAL TMLSRKNVGY ASTCNAVGQT AGYFLGNIVF LALESPTFCN 300
  301 DFLRSKENYK DTGIIDLAGY VFFWGWVFIV TTTLVLVLKR EVDKSVPSNQ NNGEVVPAGE 360
  361 EDEELELGVA ESYAVLYKIL KLKSIHYMVA ILLTGKLAFA ASDGMTSLKL IEMGIPKDRL 420
  421 AGIGVFLTPM QIMLPWMIGK WTAGPRPLNV FLLAFPYRIF IGGVFAALVW WTPHFSLPDG 480
  481 KFEYSVYIVW ITGYIFHQLA TYSMFVSMMA FIAQISDPRI GGTYMTMLNT LNNLGGNWPV 540
  541 TVVLAVTDWF TYKDCVVKGT KEILYACNTK VLADQCSSGG DVCEVAVDGY FISVAICSVI 600
  601 GVIWYKVFYN KIKYLQKIPR SQWRVFPSRS AE