YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE06428
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	23	0.91
Transmembrane Helix	24	45	0.78
Non-Cytoplasmic	46	81	0.90
Transmembrane Helix	82	102	0.91
Cytoplasmic	103	111	0.83
Transmembrane Helix	112	131	0.94
Non-Cytoplasmic	132	143	0.68
Transmembrane Helix	144	164	0.84
Cytoplasmic	165	175	0.74
Transmembrane Helix	176	197	0.91
Non-Cytoplasmic	198	204	0.66
Transmembrane Helix	205	223	0.95
Cytoplasmic	224	262	0.92
Transmembrane Helix	263	286	0.84
Non-Cytoplasmic	287	306	0.88
Transmembrane Helix	307	326	0.93
Cytoplasmic	327	332	0.90
Transmembrane Helix	333	352	0.93
Non-Cytoplasmic	353	360	0.80
Transmembrane Helix	361	380	0.94
Cytoplasmic	381	398	0.84
Transmembrane Helix	399	421	0.90
Non-Cytoplasmic	422	431	0.89
Transmembrane Helix	432	453	0.95
Cytoplasmic	454	495	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRIRLRNDV SSSSFWTRIT GQKWSKHHVF IFVHTFMSYA MLHATRKTLS TVKPSLIHTW  60
   61 ISNTSTPDGP VFPSQQAAAE FLGVLDTGFL VAYAIGLYIC GILGDNYNPR RLLTAGMMLS 120
  121 SIIVFCFGYL TETFHFYSPM VYSFLWILNG FIQSVGWPVE VSIMGNWFGH NARGAVMGAW 180
  181 SSCASVGNII GTLIASYTLF LGYQYSFLIA CSLLFIYSFL VFFQLPSAPW EVSSDILPEQ 240
  241 MEEEETDDEP TERPPPIGFL KAWLLPGVIA YSLAYACLKL VNYGFFFWLP YYLHAGLHWP 300
  301 ESYADSLSTW YDVGGIVAAV LAGAFSDHMR SRTPVVFIML LMATVSLYIY AHSPESYNWN 360
  361 AFLLLVAGFF IGGPANMISS SITADLGKCD QLRGNAEALS TVTGIIDGTG SIGAAIGQWF 420
  421 IPSVQHWFGW DAVFYGFIVM ILCTALCLVP VLWKEHKERR IHRSEEVDSL LQSDSDENLA 480
  481 DDIQEIRRRP TNAIV