YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	vha-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYDLETAER AAYAPFFGYM GAASAQIFTV LGAAYGTAKS AVGICSMGVM RPELIMKSVI  60
   61 PVIMAGIIGI YGLVVAMVLK GKVTSASAGY DLNKGFAHLA AGLTCGLCGL GAGYAIGIVG 120
  121 DAGVRGTAQQ PRLFVGMILI LIFSEVLGLY GMIVALILGT S

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.65
Transmembrane Helix	16	38	0.82
Cytoplasmic	39	57	0.57
Transmembrane Helix	58	79	0.92
Non-Cytoplasmic	80	95	0.68
Transmembrane Helix	96	118	0.92
Cytoplasmic	119	132	0.62
Transmembrane Helix	133	158	0.87
Non-Cytoplasmic	159	161	0.63