YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE06267
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.76
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSVAIAGAG LVGALNACFF AQKGWDVSVY EFRKDIRTMK HVQGRSINLA LSQRGKSALE  60
   61 AVGLKEYIVN QGVPLYARLI HNKDGKTYSR QPYGKPGEHI VSINRRHLNE VMITQAEKSP 120
  121 NVKFFFEHKV KNVDYDKKQL VVQCTSQPSK IPTFGNKSPP QEHAEFHVEA DLILACDGAY 180
  181 SAVRRSLMTI PRFDFSQEYI EHGYVELNIM ANNNEFAFEE NVFHLWPRGH FTLIALANRD 240
  241 KTFTVTIFAP FSEFEKHMST SEDVLSFFEE NFPDAFLLLG KEHIADTFNR VKPQPLVSIK 300
  301 CSPHSFFDNL VLMGDAAHAM VPFYGQGMNC GFEDCLVFSE TLEEYGNDIA KAVKVYSDGR 360
  361 VNDAHSINDL AMYNYEELKD LVNKSSYKLR KKFDTIMNSI FPKSWIPLYS MVTFSRIPYS 420
  421 EVIERRKRQD KILSRIMTTT STLALIGAAA GIYVNRGKLG L

Type	Start	End	Confidence
Signal Peptide	1	21	0.88
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	435	0.94
Transmembrane Helix	436	455	0.75
Cytoplasmic	456	461	0.33