YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE05985
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTISPDIVT NSTEEVAECS RNETYDFNRY ALIVYVGTPI AVAGVICNWI LFRLFTKSKS  60
   61 TKSPALYLLL LAVLDLLMDL LYIPFFTVDA LAIYHKNEFL YHIWHDYAMF VFGLSRLVQF 120
  121 ASTYIILCAT IERFIVVAEI NSLDFLISST GRFVTIGITF LGVAILRLPA FFEYFITYRP 180
  181 DCPLYENYDY TPILASWEHY QMFNFYVMTV LHIFVPFALL LMLNISIVVV TKRKLTGIGW 240
  241 AVTTFIDMPK VSEMIRKESI NSNKRRRDEL RYATWTMVSI ATTYLCCSSL SLFIGILENV 300
  301 WPENTLLFQE DGSSTKFYTF ASDAVSILVA VNSLLRIVVY SLCSPNFRKQ LVKEYPCLKC 360
  361 LTCGSDGDEK AKKIKEEKKL FIGYQNLIMG ARVDML

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.98
Transmembrane Helix	31	52	0.93
Cytoplasmic	53	64	0.85
Transmembrane Helix	65	86	0.91
Non-Cytoplasmic	87	107	0.91
Transmembrane Helix	108	131	0.81
Cytoplasmic	132	148	0.80
Transmembrane Helix	149	170	0.88
Non-Cytoplasmic	171	207	0.93
Transmembrane Helix	208	230	0.89
Cytoplasmic	231	272	0.98
Transmembrane Helix	273	297	0.92
Non-Cytoplasmic	298	317	0.96
Transmembrane Helix	318	340	0.84
Cytoplasmic	341	396	0.92