YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sel-11
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVSAGLMIG GSCVATAATI LNAFLINKQF YPSIVYLSKS NASMAVIYVQ GIVLVYLMFQ  60
   61 LLKSILFGDL RAAEAEHLSE RTWHAVLETC LAFTVFRDDF SAIFVMQFIG LLFIKCFHWL 120
  121 ADDRVDMMER SPVITLRFHL RMMTVLAALG FADSYFVSSA YFTTITRGAS AQIVFGFEYA 180
  181 ILLALVLHVT IKYLLHMHDL RNPQSWDNKA VYLLYAELFI NLIRCLLYGF FAVVMLRVHT 240
  241 FPLFSVRPFY QSVRALHKAF LDVILSRRAI NAMNSQFPVV SAEDLAAMDA TCIICREEMT 300
  301 VDASPKRLPC SHVFHAHCLR SWFQRQQTCP TCRTDIWQGR NGAAAGGNAA DAAANVADAN 360
  361 VAGAQIGAGM PPFLPFLGHQ FGFPQQPAGA GGAQPGAAQA GGQPGPFPHQ IFYAPAPANR 420
  421 PEFMNLIPPP PLPMAGPPGM FPMMPPPPLP QVNTTQGTSS ETPPVNPSYS QLSTEELRRM 480
  481 EGESREALLA RLQAMDNIMV LLESAQMQMI QLATVTPIRP RPVVPSDESE QEAPGPSTDQ 540
  541 VTSEEQEIPA TSSAPSIFRT ESPSTSSTAP STSSPVTASS TPTTSSTRTP EAEEVRQRRL 600
  601 ARLLGENANQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.61
Transmembrane Helix	7	26	0.94
Cytoplasmic	27	41	0.60
Transmembrane Helix	42	62	0.83
Non-Cytoplasmic	63	100	0.74
Transmembrane Helix	101	121	0.86
Cytoplasmic	122	137	0.95
Transmembrane Helix	138	162	0.82
Non-Cytoplasmic	163	172	0.76
Transmembrane Helix	173	195	0.86
Cytoplasmic	196	212	0.92
Transmembrane Helix	213	236	0.81
Non-Cytoplasmic	237	610	0.97