YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE05789
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIGNQTALE SQAENISSYD STIMQPDYTN PCSAADDYLI TERFWLCVVA GVTVSIISIV  60
   61 FNTFIFFVFV TNKQHRRSPN LYLLLLSLFD VFIAFAYIAV MSVRILVNFT SSVFLKSIWV 120
  121 HYMIPMLTVS HIGITSSTFL ICFASIERYC ITVNHFFVPY LQRFRPLLAF TAIMCGVVSK 180
  181 GTIVKEVDIS YNPECYGELN YWTVVPSQLL FDFPKINEYW RFYFRNIFTI LAPFFILLLV 240
  241 NCLLLFQLRE HVLKSKCADH DKQNVKEKKA RIRATTKSVV IIVCTYLMSN LLSVIITIWE 300
  301 YIDKESIFSE DWIAFYVLSV DVISLLTIVA SSARLPIYAY FQPLLRKEMG QCLGDWWCCC 360
  361 FSENDKKMSL LDDLQLPKTQ LISTPDGETP SISSKIEFV

Type	Start	End	Confidence
Non-Cytoplasmic	1	46	0.92
Transmembrane Helix	47	70	0.92
Cytoplasmic	71	80	0.85
Transmembrane Helix	81	101	0.93
Non-Cytoplasmic	102	121	0.79
Transmembrane Helix	122	146	0.84
Cytoplasmic	147	163	0.86
Transmembrane Helix	164	184	0.88
Non-Cytoplasmic	185	226	0.95
Transmembrane Helix	227	246	0.95
Cytoplasmic	247	277	0.94
Transmembrane Helix	278	299	0.94
Non-Cytoplasmic	300	312	0.89
Transmembrane Helix	313	337	0.83
Cytoplasmic	338	399	0.97