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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: lrp-1
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILRLLIFTA LAVTTANSST RQQSTFHSIQ VDSPPSVRSR IISASVNTAS SVCNENDFRC  60
   61 NDGKCIRTEW KCDGSGDCSD GEDEKDCPHP GCKSDQWQCD TYTWHSVSCI AEYQRCDNIT 120
  121 DCADGSDEKD CPASTVDCSS QNVFMCADGR QCFDVSKKCD GKYDCRDLSD EKDSCSRNHT 180
  181 ACFQYQFRCA DKTQCIQKSW VCDGSKDCAD GSDEPDTCEF KKCTANEFQC KNKRCQPRKF 240
  241 RCDYYDDCGD NSDEDECGEY RCPPGKWNCP GTGHCIDQLK LCDGSKDCAD GADEQQCSQN 300
  301 LCPSLGCQAG CHPSPHGGEC TCPSGYKLDD RFHRTCSDIN ECAEFGYCDQ LCANHRPGFT 360
  361 CSCLGDCFTL QMEHGPGKDN LTMRGYCVSN NADKMKLFVA RREGLYRLNP KNPDEEVKKL 420
  421 ASGEFIYGID FDYGDRKIFW TDRLAHSAFS ADVDDEGEIS QIKKLSLKSL VYPRCLAVDW 480
  481 ITNTLYIIES GSRRIDVSSY DGERRTVLLA DGLTLPLDIA LDPLRGEMFF TNQLKLEAAA 540
  541 MDGTNRRTLV NTHTHQVSGI VVDITAKRVY WVDPKVDRLE SIDYQGNDRR IVAQGMNVVP 600
  601 HPFGLALFDQ YLYWTDWTRL GVIQVEKFGS DTKLLWSNTE NNVFPMGISA YHPMAQPGPG 660
  661 QSECLAMKIE NPCTNADCEG MCILSKDNGG FGVGYKCACP IGQKLVNGKR CIDSIDYLLF 720
  721 SSNKIVRGIF PEINEKALAE AVLPISPISQ RRIGMYFEVE CDVHGNSFFY ADIMDNTIYR 780
  781 IRPDGEGAAP VLVTHNDGLF SMSFDWISKQ LYYVDNIRNS LEVVKIGETG LVHPDELVRR 840
  841 QLITELRDPV SVVVHPWKGL LFYAEAMRPA AIYRCHIDGQ NCQVIRNTTL GRPSEMAIDF 900
  901 AENRLCWGDT LLKTISCMDF DGKNVVKLDI DNPIPVAITI MNEYIYYVHQ RPYSIRRVHK 960
  961 KNGGGSKIVR EFGADERSIF SLKACSHQNQ PIPDDSREHP CRASQCTQLC FATPSESHPN1020
 1021 ELEAKCACRQ GFMINKENNH SCQKDPAEKI EQLCSSNSTQ FQCKNGRCIP KEWKCDGEND1080
 1081 CLDESDEIDE KGDKCFHETE CAENTIKCRN TKKCIPAQYG CDGDNDCGDY SDEDVKYCKD1140
 1141 GQKPVCAAKK FQCDNHRCIP EQWKCDSDND CGDGSDEKLE MCGNATCAAN QFSCANGRCI1200
 1201 PIYWLCDGDN DCYDGTDEDK ERCPPVQCSA LQFRCANGRQ CVPLRNHCDG QSDCEDGSDE1260
 1261 DSCAVTAESC TPDQFKCVSS GLCIPASWKC DGQQDCDDGS DEPKFGCTSG RQCSSDQFKC1320
 1321 GNGRCILNNW LCDGENDCGD GSDESSERGC KTSMNARKCP FEHVACENDQ ETCIPLHQLC1380
 1381 DGKTHCPGGT DEGGRCARDL CSADRAGCSF KCHNSPNGPI CSCPFGEQLV NKTKCEPENE1440
 1441 CLDSSSCSQR CKDEKHGFTC SCDEGYELDV DKRTCKVADN VKDTRIYVSN RNRIYYSDHK1500
 1501 LDNWHTFGAI VENAIALAWD SLTDRIYWSD IREKKILSAN RNGTNATVFI ADGLDITEGI1560
 1561 ALDWVGRNLY WVDSSLNTIE VANLEDPKQR TLLVHQNVSQ PRGIAVDPRK GVMFWTDWGQ1620
 1621 NPCIERASMD GTDRQIIVKT KIYWPNTIAL DYTTDRVYFA DSKLDFIDFV NYDGSGRTQV1680
 1681 LASSKFVQHP HALAIFEDMM YYSDRRLQKL QVYPKYPNGT TSEYPSHTFS KALGVVAVHP1740
 1741 VLQPVIKNNP CSTNPCSHLC LLNNKNTFTC KCPMGEKLDA SGKKCIDDAK PFLVIIQKTN1800
 1801 VFGIEMNSAS EKETPVLAGM VPLSGLGNAF DAAYDALSEE MFILEHTNHA KTLAQITTDS1860
 1861 AIYRSTVNGG NKTKMFSSAV PDDAYCLGFD WNGRNLVVGN KITQTIEIIR TQGKQYRSVI1920
 1921 LSNDQSPTAV VTPVAIAVDA DKGYVFWLDR GGGAADAKVA RAGLDGSNPL VIASNDLAEL1980
 1981 DHIAIDTTNT RVYFSEAKAG RISSVTYDGQ DRHYVLSDGG RQPNGLAFYG DRLFYADSAF2040
 2041 DSIEVATING DSQPPQWTHF KKDVENLANI KALQPRASSS GHPCHINNGN CDHICIPLMF2100
 2101 AQRTCTCANG YVKDGQTSCK LFDESFVIVA TKTKVIGYPI DETQSKGVAM EPIGGLSITG2160
 2161 VDYDYESKTI YVAEASGINK GITAYTIGES SPRAVIRDSI GSLTIKSLAI DWINYNMYFI2220
 2221 NHDAERTNIE VSKLDGTYRK ILLTTKTETP SSIAVDPVSR YLYWADQGQK PTIQRSFLDG2280
 2281 SRREVIVSSG IAEPTDLVVD VASKMIYWSD AKMDGIYRVR STGGTPELVR SDIASAAGVA2340
 2341 LHGQNMYWTD NRLEKLFRAT SKPNQTSLLL SPTTVAASLK DIGDVAVFSS NNQPRASSPC2400
 2401 QITDNLRKSP CTQLCFATPG TQTPTCSCAR GVLKGRTCEE PDTYIMFSDG DKIIDVAIEP2460
 2461 DVKASRPLKD PFPEISNLQT FDVDVNLRRV YFVVESPVGV NISWFSMNNA ENPRLVFGAS2520
 2521 KQPHAKEIRH ISDMKLDWLT QKIYFTTGRG GKVMAIDTAG EHLSTIASGD WTYALAIDPC2580
 2581 SGLLFWSDSG YKTSGGLYEP RIERSNLAGG SRKVIVSESI SLPAAIAVDF RNQKIYWADV2640
 2641 NRLNIEVADY DGQNRKVIAS GYRAKSLDIW DRWLYMSDPL SNGVFRIDKE SGSGLENVVS2700
 2701 DRRIPGALRV FASESDVRTR NQVCNALTSQ LCKTDNGGCD QLCTVVADDI GLAASKVQCS2760
 2761 CNDTYELVQE PGKDYPTQCV LRGSNSEPAK ECLPPYNFQC GDGSCILLGA TCDSKPDCAD2820
 2821 ASDENPNYCN TRSCPEDYNL CTNRRCIDSA KKCNHIDDCG DGSDELDCPS AVACAEGTFP2880
 2881 CSNGHCINQT KVCDGHNDCH DEQVSDESLA TCPGLPIDCR GVKVRCPNTN ICIQPADLCD2940
 2941 GYDDCGDKAD ENQLFCMNQQ CAQHYVRCPS GRCIPETWQC DGDNDCSDGW DETHTNCTDT3000
 3001 AGKKICVGDY LFQCDNLKCI SRAFICDGED DCGDGSDEHS RHGCGNRTCT DQEFHCTSNA3060
 3061 KLAQPKYECI PRAWLCDGDV TCAGGEDEST ELCKTEKKEC NKGEFRCSNQ HCIHSTWECD3120
 3121 GDNDCLDGSD EHANCTYSSC QPDFFQCANH KCVPNSWKCD GNDDCEDGSD EKDCPKNSAS3180
 3181 AQKASKCSNG QFQCTSGECI DDAKVCDRNF DCTDRSDESS LCFIDECSLA EKPLCEQKCM3240
 3241 DMKIGYKCDC FEGFAIDISD QKSCHNVNEC YEGISGCSQK CDDKIGSYKC GCVDGYQLSS3300
 3301 DDHSCKRTEM EPEPFFLLAN KHYIRKISID GNKYELAAQG FDNVVSLDID LTEKKAYLID3360
 3361 QGKLRLLRVD LDEMDSPLSS YETVLRHNVY GTEGIAVDWV GRKLYMLNRQ ERSIRVCELD3420
 3421 GRFCKTLIRD RIQQPKAIVV HPGKGYLFFT EWSLQPYIGR IALDGSPELQ DPIFKLAEHD3480
 3481 LGWPNAIAID YFSDRLFWGD AHLNEIGFMD FDGNGRRHIP AQRTSHVSSM VVFDDYLYWA3540
 3541 DWNLREVLRC DKWTGKNETI LKKTVQLPND LRIVHPMRQP AYPNPCGDNN GGCSHLCLIG3600
 3601 AGGNGYTCSC PDQFVLLSDQ KTCEPNCTER QFACGGDDAK CIPKLWYCDG EPDCRDGSDE3660
 3661 PGESICGQRI CPVGEFQCTN HNCTRPFQIC DGNDDCGDSS DEQNCDKACD PWMFKCAATG3720
 3721 RCIPRRFTCD GDDDCGDRSD EADTLCMSAE RNCTAEEFRC NNNKCIAKAW RCDNDDDCGD3780
 3781 GSDETPECAQ IECKKGWTRC SSSYRCIPNW AFCNGQDDCR DNSDEDKQRC PTCDDVGEFR3840
 3841 CATSGKCIPR RWMCDTENDC GDNSDELDAS CGGTTRPCSE SEFRCNDGKC IPGSKVCDGT3900
 3901 IQCSDGLDES QCTLRRCLPG HRQCDDGTCI AEHKWCDRKK DCPNAADELH CEDVSRRTCS3960
 3961 PFEFECANSV CIPRKFMCDG DNDCGDNSDE TSSECRSAQC DPPLRFRCAH SRLCLNILQL4020
 4021 CNGFNDCGPN DFSDEHLSMC SSFSEYGDCS SDQFKCANGK CVNGTVACDR KDDCGDASDE4080
 4081 IGCSKHGGKT SCEAFGNNGG CKHICTDVRD GFYCHCRDGF RPDPQSPKEC IDIDECAGNN4140
 4141 TCTQLCLNTK GSYLCRCHED YENNVVVGSM TGKDCRAKGD AANVMIGADD SLVQLSLHGS4200
 4201 GTNRHAAAKA NDDDNDIIGI AFDPRKELMY WIDGSERTIY RSAIANGNQS HEGQKLDVDF4260
 4261 AAMGVVPTAI AVDYTTGNLF IAAVSENIEN GLVTARKKRM SEPIDNQNTG FIFVCLPDGR4320
 4321 YLKKIVAGHL QQPTALITAP SAGRICYSDA GLHAKIECAD MDGTHRQIIV KDLVFSPTSM4380
 4381 AIDEGKGNRI YWVDPKYRRV DAVNIDGSER TTVVHDRHIP YAVDVFENHI YWLSRESKTL4440
 4441 YVQDKFGRGR VSVLASDLED GHTVRVSQKY AKDTQRTVSG CERAQCSHLC VSLPSTGFAC4500
 4501 LCPDGIVPQL DGSCATQHVE ALTMPKQCKC TNGGKCRLDG SCECTSDFEG DQCEKESSVS4560
 4561 RKIIGTLSEN FITVLLYILA FLFAFGLIGF CALNLYKRRQ LLFKKNEAAD GSVSFHGNVI4620
 4621 SFSNPVLENK QDAPGSEFNM QQMTSMHDDS TTFTNPVYEL EDVDMSSPPP SNDQPSTSAS4680
 4681 AMSPNRPSTS AASSFVPPTF DQDEIELKTA DEIIVPKAEI SKPPIPARPK KEKADPLRVD4740
 4741 NPLYDPDSEV SDV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle