YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acc-2
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFTLLSTLP VLIITTELDY SELVHSAELV SSSSYIHHKT NKKPDNCTRD TDIIDRLLNG  60
   61 TGYNKFRIPQ EEGMTVVVEI WIQAITSIDE LTNDFDMDIY ITETWLDPAL NFQTMTPCKG 120
  121 NLSLNHQVLD RLWTPNSCFI NSKVAQIHNS PFRSVFLMLF PNGTVMVNYR VRVKGPCSLD 180
  181 LSNFPLDLQK CSLIYESFNY NRQEVEMRWS DAEHPVFNLS KIMLPDFDLF EIQTERRQEP 240
  241 YPAGMWDELH VTIIFERRFI WYFMQAYLPT YLTIFISWIS FSLGSRAIPA RTMLGVNSLL 300
  301 AIVFSFGNIM RNLPRVSYIK GIDVWMLVSM TFIFCSLLEL AIVGFMVRDE TVAKKKQQKK 360
  361 ISGNISREES PHGIISERRF MFPPGCSESS KSLSSCTSGW TPERIDSISS VMFPFSFFVF 420
  421 NIIYWFYYIH RKEIIKQNLI NRVDG

Type	Start	End	Confidence
Cytoplasmic	1	258	0.68
Transmembrane Helix	259	281	0.87
Non-Cytoplasmic	282	287	0.60
Transmembrane Helix	288	310	0.85
Cytoplasmic	311	321	0.66
Transmembrane Helix	322	343	0.90
Non-Cytoplasmic	344	407	0.75
Transmembrane Helix	408	428	0.92
Cytoplasmic	429	445	0.76