YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	egl-47
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSFSNGSPL HIDLSQHHPD NHSHRNNIHK PNMDNLDNSD VENALILDNL DNHHMTSNEQ  60
   61 FPPSGRRGVH CVSNSLRSIL FLFRLLAIFP ATTDRKSRRK RNHRSIIKLI LYVNYIVLAV 120
  121 LLNSFLIKMN FKVLMLYKHK FGLMHTGTVA SMITATKPVI NVFVIVLSAI KFKSHQRLLK 180
  181 TIDMVDVCFR SAFGVSPPLR IYKFVFFFTL LIIFFSALIL KVVEFVGTGE IFGEHILTDC 240
  241 SFILVPVLSL WNIIPLLYYH LYNILVRFYC RTLIKSMNRE HKKRHFSLKF YYEQFTRITN 300
  301 VQEAVGDVFN PLLLFSLAWS LLVLCLTLYF LSEPTSTLLV PITPEQVTNP KIREKLNITV 360
  361 HVKICWAAYQ VVMAILHIII ICSTGMMTNE TTRQIVNAVL RIVPDANADL DRFQISCFVH 420
  421 KMTTQFMWGM TVWRAFPLER TTFFTLISVI VTYSLLLFRF KDDMVQNPPY MAAMAVFNTS 480
  481 AVPTPAPG

Type	Start	End	Confidence
Cytoplasmic	1	104	0.88
Transmembrane Helix	105	127	0.91
Non-Cytoplasmic	128	147	0.89
Transmembrane Helix	148	170	0.86
Cytoplasmic	171	200	0.90
Transmembrane Helix	201	223	0.88
Non-Cytoplasmic	224	241	0.78
Transmembrane Helix	242	262	0.80
Cytoplasmic	263	311	0.82
Transmembrane Helix	312	331	0.88
Non-Cytoplasmic	332	365	0.78
Transmembrane Helix	366	387	0.85
Cytoplasmic	388	435	0.73
Transmembrane Helix	436	460	0.74
Non-Cytoplasmic	461	488	0.55