YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	rhr-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.90
Transmembrane Helix	10	29	0.95
Non-Cytoplasmic	30	49	0.89
Transmembrane Helix	50	68	0.92
Cytoplasmic	69	77	0.67
Transmembrane Helix	78	98	0.89
Non-Cytoplasmic	99	113	0.69
Transmembrane Helix	114	132	0.86
Cytoplasmic	133	139	0.66
Transmembrane Helix	140	159	0.82
Non-Cytoplasmic	160	170	0.73
Transmembrane Helix	171	189	0.75
Cytoplasmic	190	201	0.60
Transmembrane Helix	202	227	0.77
Non-Cytoplasmic	228	237	0.62
Transmembrane Helix	238	259	0.86
Cytoplasmic	260	266	0.54
Transmembrane Helix	267	285	0.64
Non-Cytoplasmic	286	291	0.66
Transmembrane Helix	292	312	0.94
Cytoplasmic	313	327	0.88
Transmembrane Helix	328	350	0.88
Non-Cytoplasmic	351	384	0.94
Transmembrane Helix	385	405	0.91
Cytoplasmic	406	457	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSVLHRRQF AIIAGLMQTV FIVLFAKYVK YIDPLDDSRR VYSGTDYPLF QDVHLMIFVG  60
   61 FGFLMAFLKR YGFSAVSVNL LLSAFVIQFA MLLRGFMTVA FQETGLFSIG IPEMISAESS 120
  121 CAAVLITMGV LLGRLTPVQF LLLAFFETGI NVLVEHYVFN YLHVNDSGRS LSVHTFGAYF 180
  181 GLAAACVGHK KNVMEMDEHG GIHHSDLFSM IGTLLLWVFF PSFNAAIQEP EDARHRAIMN 240
  241 TYLAMASGTV TTFMISSCVD TLGRFNMIHI QSSTLAGGVA IGSSANAVLH PYHAVIVGVI 300
  301 AALLSVIGHA WISPRLERTF HLFDTCGVHN LHGMPGILAG LLSIGFAYFY EPESYGKTLY 360
  361 HIYPYWIGGE LHGDRENVSQ AQYQALGLLT ILVTAVIGGL LTGCILKIKV WNQVDDPDFP 420
  421 HGEMNYYAQS DVNFLSKYKH AQEQERLRER EQMQEIY