YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE04555
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKKNWISIK NYANGFHQKL CKFDEPVTAN NVKCVTIVDL RLKLELEKQK GSSFSNGILE  60
   61 IFYSLIYLFP LKDKSFPEMF IFENDIDMSF AKGFMTVVYI VVCLVGTPGN LWIIYKLFRA 120
  121 KLWSGASVQL TVSQRSRIYI FALACSDMFL LLTLPATASY NYHGTWIFGS AACYIIRSIE 180
  181 IFAKLFSVVL LTVMSLERYI IVCTRLRHIY RAWMSLVPLA VGTIFGVLVP TIIHYFYLQH 240
  241 FSVPFDPDVT WVCLPLMSNE VFNLFAQYTF VVGFIIPFAI MTACYIMLVR HVRTKYKMRR 300
  301 AQTTTTLAKP GKEPRYMSEV KKSIWRIAVF HFVCWAPFWG FTMLPNYIYQ IDQFLHGDNE 360
  361 EESGGESIFL VYCRLVSNCL PYINAAGNWV LYALLNVDVR KHIYNQPKKK RKFTLKFNPV 420
  421 NTSSNC

Type	Start	End	Confidence
Cytoplasmic	1	50	0.93
Transmembrane Helix	51	71	0.86
Non-Cytoplasmic	72	94	0.92
Transmembrane Helix	95	115	0.94
Cytoplasmic	116	137	0.90
Transmembrane Helix	138	158	0.95
Non-Cytoplasmic	159	173	0.80
Transmembrane Helix	174	196	0.77
Cytoplasmic	197	212	0.79
Transmembrane Helix	213	236	0.90
Non-Cytoplasmic	237	265	0.95
Transmembrane Helix	266	289	0.92
Cytoplasmic	290	323	0.97
Transmembrane Helix	324	345	0.86
Non-Cytoplasmic	346	426	0.71