YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	chtl-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	91	0.98
Transmembrane Helix	92	115	0.91
Non-Cytoplasmic	116	311	0.99
Transmembrane Helix	312	332	0.94
Cytoplasmic	333	338	0.86
Transmembrane Helix	339	361	0.91
Non-Cytoplasmic	362	389	0.95
Transmembrane Helix	390	412	0.93
Cytoplasmic	413	432	0.90
Transmembrane Helix	433	455	0.88
Non-Cytoplasmic	456	515	0.95
Transmembrane Helix	516	541	0.92
Cytoplasmic	542	561	0.94
Transmembrane Helix	562	582	0.91
Non-Cytoplasmic	583	600	0.86
Transmembrane Helix	601	622	0.68
Cytoplasmic	623	660	0.72
Transmembrane Helix	661	685	0.83
Non-Cytoplasmic	686	698	0.78
Transmembrane Helix	699	721	0.87
Cytoplasmic	722	771	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRKKHRTIP AVEVYEKSDG FPMPTAPPMS PSRMDGVYPS HHVPPLHQAY HVQPASANHV  60
   61 PDQIARFNVI KPDRLAKRHN PQLYTKRGCT DVFCCFLFFV FLCGWVVVAG FGIMWGDPQR 120
  121 LIYPTDSEFR RCGVNLEGSY NFSKRPYLFY FDLTKCISYA TALGGCQTTQ LCVKECPSTY 180
  181 FSYLQLRTAS VSEIQNKMKS VVYCTDDVDK TTVTTFQALQ NLVQRGKCVS YTVKSVPVLQ 240
  241 RCFPEAIFNA VDNVNNVLNS SNSLDYLKRT FGDDALIPQD IQITGQSSEV MKSVVEDQPV 300
  301 THKVIHDLSQ TWWQTLILIF AAGILSFIWT VIMRLLGSLI IWLSILIVLV ALGFGAGFSW 360
  361 LKWNTLKTTG AIDDYSFHPA FDAYFEMPTT WLVVAIATSV LLLIFLLVIL FIRQRISIAC 420
  421 ALISESSKAI GSMMSTLLFP LFPFLLHIGV FALWGSIAIW LASSGQEVCR LKETNGQVYN 480
  481 TSTKCDCTAK VTGCTYVGIE KESETIFWLQ VYNLFAFFWL SCFVTALGDI ALAGAFASYY 540
  541 WARDKRHDVP TFPVIRALNR AIRYNLGSIA FGSLIIAIVK IIRVLLEYID HKLGKSQNKA 600
  601 VKWFLMCLKC CFWCLEVFFK FLTKNAYIMI AIYGKNFFSS AKDSFLLITR NIVRTVVVHK 660
  661 VAGILLFLGK SMITLGMGIL SFYYFSGRWV VEGVPKVDLY YYFVPIVIVV IGSYFMADLF 720
  721 FDVYEMAVDT TFICFLEDSE QNDGSLERPF FMSEKLLEIL GNKNDIPLHS K