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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: pcca-1
Protein type: Globular with Signal Peptide
Type Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRAASSIRA VANRGLATAA VARPGVPLDE REGKEIYTTV GIDYNEPKFD KILIANRGEI  60
   61 ACRVIKTARA MGIKTVAVHS DVDSNSLHVK MADEAVCVGE APTAKSYLRA DRILQAVEDT 120
  121 GAQAVHPGYG FLSENTKFAA ELEKAGAKFI GPNSKAILDM GDKIHSKKIA TAARVSMIPG 180
  181 YDGEIADEDM CVKVSRDIGY PVMIKASAGG GGKGMRVAWN DKQAREGYRL SKQEAASSFG 240
  241 DDRMLVEKFI DNPRHIEMQV LCDKHGNALW LNERECSIQR RNQKVIEEAP SSFVPPEMRR 300
  301 KMGEQAVQLA KAVGYDSAGT VEFLVDSQRN FYFLEMNTRL QVEHPITECI TGIDIVQQML 360
  361 RVSYGHPLPI TQEQVPLNGW AFESRVYAED PYKGFGLPSV GRLSRYVEPK HVDGVRCDSG 420
  421 IREGSEISIY YDPLICKLVT HGDNREQALN RMQEALDNYV IRGVTHNIPL LRDIVQEKRF 480
  481 RTGDITTKYL PEVYPEGFQG TSLSPKEQDV VIAFASALNA RKLARANQFL NQNKQRSTHV 540
  541 ASFSKTYKFV SSLPVKEGER PTEHAVEVEF VEGSANKAQV RIGGKTVTIS GDLNLSHPVN 600
  601 SIEVDGEHIT TQIVGKRAGE ITVLYKGTPF KVKVLPEQAV KYLQYMKEKA KVDLSTVVLS 660
  661 PMPGAIKNVN VKPGDMVSEG QELVVMEAMK MQNSLHAGKT GRVKAVNVKV GATVDEGEVL 720
  721 VELE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle