YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE04398
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	23	0.95
Transmembrane Helix	24	46	0.92
Non-Cytoplasmic	47	96	0.83
Transmembrane Helix	97	122	0.85
Cytoplasmic	123	129	0.69
Transmembrane Helix	130	149	0.72
Non-Cytoplasmic	150	164	0.87
Transmembrane Helix	165	187	0.90
Cytoplasmic	188	197	0.84
Transmembrane Helix	198	220	0.95
Non-Cytoplasmic	221	260	0.94
Transmembrane Helix	261	282	0.93
Cytoplasmic	283	299	0.93
Transmembrane Helix	300	322	0.91
Non-Cytoplasmic	323	330	0.80
Transmembrane Helix	331	351	0.89
Cytoplasmic	352	364	0.73
Transmembrane Helix	365	385	0.87
Non-Cytoplasmic	386	400	0.85
Transmembrane Helix	401	424	0.92
Cytoplasmic	425	434	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIINRSNTY AVEQEAFPRD KYNIVYWLVI LVGFGVLLPW NMFITIAPEY YVNYWFKPDG  60
   61 VETWYSKEFM GSLTIASQLP NASINVFNLF LIIAGPLIYR VFAPVCFNIV NLTIILILVI 120
  121 VLEPTEDSMS WFFWVTLGMA TSINFSNGLY ENSVYGVFAD FPHTYIGALL IGNNICGLLI 180
  181 TVVKIGVTYF LNDEPKLVAI VYFGISLVIL LVCAIALFFI TKQDFYHYHH QKGMEIREKA 240
  241 ETDRPSPSIL WTTFTNCYGQ LFNVWFCFAV TLTIFPVMMT VTTRGDSGFL NKIMSENDEI 300
  301 YTLLTSFLVF NLFAAIGSIV ASKIHWPTPR YLKFAIILRA LFIPFFFFCN YRVQTRAYPV 360
  361 FFESTDIFVI GGIAMSFSHG YLSALAMGYT PNVVPSHYSR FAAQLSVCTL MVGLLTGGLW 420
  421 AVVIEHFVDK PSIL