YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE04283
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVKDIDNYC DRGISPNASN YLTYPFDGLC LQKFFYQLQT SLRRFTPYEE IIYTTVYIII  60
   61 SVAAVIGNGL VIMAVVRKKT MRTNRNVLIL NLALSNLILA ITNIPFLWLP SIDFEFPYSR 120
  121 FFCKFANVLP GSNIYCSTLT ISVMAIDRYY SVKKLKIASN RKQCFHAVLV SLAIWIVSFI 180
  181 LSLPLLLYYE TSMLYVMREI RVVDQSGQEV IRSYGWRQCR LVSAGRLPDI TQSIQLLMSI 240
  241 LQVAFLYIVP LFVLSIFNVK LTRFLKTNAN KMSKTRAPPK RFDRSDSHHN SLKNNNNHTS 300
  301 SLRSPSMPSI RSSITERNKT NQRTNRTTSL LIAMAGSYAA LWFPFTLITF LIDFELIINQ 360
  361 DYVNLVERID QTCKMVSMLS ICVNPFLYGF LNTNFRHEFS DIYYRYIRCE TKSQPAGRFH 420
  421 HDVSSIAHHR QDSVYNDEAT LLTTGRQSNG KDGSSSPIGF RSSVRVCSGQ TKMIGDRIVL 480
  481 DDDIEKDSFV

Type	Start	End	Confidence
Non-Cytoplasmic	1	53	0.93
Transmembrane Helix	54	76	0.91
Cytoplasmic	77	86	0.94
Transmembrane Helix	87	109	0.92
Non-Cytoplasmic	110	127	0.87
Transmembrane Helix	128	146	0.91
Cytoplasmic	147	164	0.83
Transmembrane Helix	165	187	0.94
Non-Cytoplasmic	188	237	0.96
Transmembrane Helix	238	259	0.87
Cytoplasmic	260	326	0.97
Transmembrane Helix	327	350	0.85
Non-Cytoplasmic	351	490	0.79