YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	npr-11
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSVNESCDN YVEIFNKINY FFRDDQVING TEYSPKEFGY FITFAYMLII LFGAIGNFLT  60
   61 IIVVILNPAM RTTRNFFILN LALSDFFVCI VTAPTTLYTV LYMFWPFSRT LCKIAGSLQG 120
  121 FNIFLSTFSI ASIAVDRYVL IIFPTKRERQ QNLSFCFFIM IWVISLILAV PLLQASDLTP 180
  181 VFVEPSCDLA LYICHEQNEI WEKMIISKGT YTLAVLITQY AFPLFSLVFA YSRIAHRMKL 240
  241 RFANRNQNVT TNTNTSQRRR SVVERQRRTH LLLVCVVAVF AVAWLPLNVF HIFNTFELVN 300
  301 SFSVTTFSIC HCLAMCSACL NPLIYAFFNH NFRIEFMHLF DRVGLRSLRV VIFGEQESLK 360
  361 KSMRTEFRSR GGCKTVTTAE PATFQRMNES MILSAMEQDE QLSSGGKLFV LKKYILKMFQ 420
  421 KGGHKQSTPA SPRLGFGYNS IMTSELFSIV EGVLS

Type	Start	End	Confidence
Non-Cytoplasmic	1	43	0.96
Transmembrane Helix	44	66	0.93
Cytoplasmic	67	75	0.89
Transmembrane Helix	76	98	0.89
Non-Cytoplasmic	99	119	0.79
Transmembrane Helix	120	141	0.86
Cytoplasmic	142	152	0.90
Transmembrane Helix	153	173	0.95
Non-Cytoplasmic	174	210	0.95
Transmembrane Helix	211	232	0.90
Cytoplasmic	233	268	0.94
Transmembrane Helix	269	290	0.91
Non-Cytoplasmic	291	306	0.82
Transmembrane Helix	307	328	0.91
Cytoplasmic	329	455	0.96