YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE03913
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHEQRKHSD FWKRRKISQS AMVTQCESNG SVTSHNTSSA FQRNNSRYGV PIDSTAVKQV  60
   61 YRVRSERLTN RVRITDRSLY LALFGVILML VESEITAEKF YGVSKTHWIS QSLRVGVTCS 120
  121 TIALLYHIIL YHLNDIVLEL VDCGADDWRV VVTTERVIQF CIEFICCGIC PLPGSGEMKW 180
  181 TFIEPSLHKD GPSEERTVQT RNVDVPVDVI LSCFMLCRSY LFARFMVLHS KQFQDASTRT 240
  241 LAALNRIQVN FSFVIKTSLD QQPVLFLTTF TFIFWIIMSW MFVQCERYGF SGKNPQSILY 300
  301 SNSLWFIAIT FMLNGYGDIV PQTNAGRFIA IFVGVVGAVI SSILIAVISR NILLSQGQRN 360
  361 VNNFMYDSKL AREHKEAAAR VLQHTWHIHK CLQGSDGGNR RLRTYQRKFL KAIHKFRSVK 420
  421 SEMREFSENN SQNNPQMTRL VTDMHTSMQR LLNVQDEMRM QIEVVKFVLK K

Type	Start	End	Confidence
Cytoplasmic	1	76	0.67
Transmembrane Helix	77	91	0.47
Non-Cytoplasmic	92	262	0.52
Transmembrane Helix	263	283	0.92
Cytoplasmic	284	297	0.58
Transmembrane Helix	298	320	0.84
Non-Cytoplasmic	321	327	0.56
Transmembrane Helix	328	349	0.94
Cytoplasmic	350	471	0.65