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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: pgp-3
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.81
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKTKVNPED DITLGKFTPK PSPQDSYQGN FFDVFRDADY KDYILFSGGL ILSAVNGALV  60
   61 PFNSLIFEGI ANALMEGESQ YQNGTINMPW FSSEIKMFCL RYFYLGVALF LCSYFANSCL 120
  121 YTLCERRLHC IRKKYLKSVL RQDAKWFDET TIGGLTQKMS SGIEKIKDGI GDKVGVLVGG 180
  181 VATFISGVSI GFYMCWQLTL VMMITVPLQL GSMYLSAKHL NRATKNEMSA YSNAGGMANE 240
  241 VIAGIRTVMA FNAQPFEINR YAHQLNEARR MGIRKAIILA ICTAFPLMLM FTCMAVAFWY 300
  301 GATLAAAGAV SSGAVFAVFW AVLIGTRRLG EAAPHLGAIT GARLAIHDIF KVIDHEPEIK 360
  361 CTSSEGKIPE KIQGKLTFDG IEFTYPTRPE LKILKGVSFE VNPGETVALV GHSGCGKSTS 420
  421 IGLLMRFYNQ CAGMIKLDGI PIQEYNIRWL RSTIGIVQQE PIIFVATVAE NIRMGDVLIT 480
  481 DQDIEEACKM ANAHEFICKL SDRYDTVIGA GAVQLSGGQK QRVAIARAIV RKPQILLLDE 540
  541 ATSALDTESE RMVQTALDKA SEGRTTLCIA HRLSTIRNAS KILVFDQGLI AERGTHDELI 600
  601 SKDDGIYASM VKAQEIERAK EDTTLDDEED EKTHRSFHRD SVTSDEEREL QQSLARDSTR 660
  661 LRQSMISTTT QVPEWEIENA REEMIEEGAM EASLFDIFKY ASPEMRNIII SLVFTLIRGF 720
  721 TWPAFSIVYG QLFKILSAGG DDVSIKALLN SLWFILLAFT GGISTLISGS LLGKAGETMS 780
  781 GRLRMDVFRN IMQQDASYFD DSRHNVGSLT SRLATDAPNV QAAIDQRLAE VLTGIVSLFC 840
  841 GVGVAFYYGW NMAPIGLATA LLLVVVQSSV AQYLKFRGQR DMDSAIEASR LVTESISNWK 900
  901 TVQALTKQEY MYDAFTAASK SPHRRAIVRG LWQSLSFALA GSFVMWNFAI AYMFGLWLIS 960
  961 NNWSTPYTVF QVIEALNMAS MSVMLAASYF PEYVRARISA GIMFTMIRQK SVIDNRGLTG1020
 1021 DTPTIKGNIN MRGVYFAYPN RRRQLVLDGF NMSANFGQTV ALVGPSGCGK STTIQLIERY1080
 1081 YDALCGSVKI DDSDIRDLSV KHLRDNIALV GQEPTLFNLT IRENITYGLE NITQDQVEKA1140
 1141 ATLANIHTFV MGLPDGYDTS VGASGGRLSG GQKQRVAIAR AIVRDPKILL LDEATSALDT1200
 1201 ESEKIVQEAL DKARLGRTCV VIAHRLSTIQ NADKIIVCRN GKAIEEGTHQ TLLARRGLYY1260
 1261 RLVEKQSS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle