YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	npr-9
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLGNVIIAS SVNTRSPIDS HLFRKILCFR IYDDTISFER KIGIIIPTIF AVIILVGLVG  60
   61 NALVVIVAFG RQMRNSTNTL IIGLAISDLM FLLLCVPFTA VDYAAPTWIF PEWTCSMINF 120
  121 FQHTSAYCSV WTLTLMALDR YLAVVYPVES MTLRTPRNTV IALCFIYIII IASQIPVGRM 180
  181 HGIYVYDFIM EKRSTCAILT IATAEATPTM ARTYFMTFNV FGYVLPLGIS VVLYGLMLRK 240
  241 LWDMPRPGNS QSVGGRNLTN RDSGSSIRRR PEATAAKRKV TRLVLCVLIT WALCWLPLNV 300
  301 CFFMSGLAYP EPLVISHGVI MVIVQIASQV LAYTNSCLNP ILYALMSQSF REGFIRVMKM 360
  361 LINKLSRGRF CTNYRRSALR TELTHYNQTP AHPANTVVQV SNGERSSLLK DNSSSATSVQ 420
  421 PLRTSIQAKK TKNVCDTMLF VCFF

Type	Start	End	Confidence
Non-Cytoplasmic	1	44	0.90
Transmembrane Helix	45	69	0.90
Cytoplasmic	70	78	0.83
Transmembrane Helix	79	101	0.91
Non-Cytoplasmic	102	119	0.83
Transmembrane Helix	120	143	0.78
Cytoplasmic	144	158	0.84
Transmembrane Helix	159	178	0.93
Non-Cytoplasmic	179	216	0.92
Transmembrane Helix	217	238	0.90
Cytoplasmic	239	282	0.96
Transmembrane Helix	283	306	0.86
Non-Cytoplasmic	307	313	0.80
Transmembrane Helix	314	337	0.73
Cytoplasmic	338	444	0.92