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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: mca-1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIIAIILVV CFIGRLIVYF WKREPKGENG KKDAKEFGCS LGDLRGLMEA RGAEAIVRLS  60
   61 TEHEGVEGLC KKLKTDSLVG LNGEQADLDR RRHVYGANTI PPAKSKGFVR LVLDACKDPT 120
  121 LVILVLSGFI NLALSFYEPT SAAEDATQHL VNATTAAILA NGTFMSTTEA PSEGHGTAWI 180
  181 EGVAILLCVI VVVLVTAVND YSKERQFRSL QEKIETGQKF SVIRNGEAID VPVSDLVVGD 240
  241 IARVKYGDLL PADGFLIQSN DLKIDESSLT GESDHIKKSI ESDPVLLSGT YAMEGSGKML 300
  301 ITAVGVNSQT GIIMTLLGAG KAGIGDDDST STSSSSSSSS SSSGSSSNGS SDSSKSGDDD 360
  361 LTAKSVLQAK LSKLALQIIY CGTTIAIIAL IVLVTRFCLD HYVFEKNEFS LVDIQMFVKF 420
  421 FIIAVTILVI SIPEGLPLAI ALALTYSVRK MMHDNNLVRH LDACETMGNA TSICSDKTGT 480
  481 LTTNRMTVVQ SYINGNHYTS QEAQPHGANL PGSTGPILME AISVNCAYNS MIVEPTKAGE 540
  541 QIQQLGNKTE CGLLGFVNRL GGDYAAIRKK FPEHDLTKVY TFNSSRKCMM TVVPYAENGQ 600
  601 NIGYRVYCKG ASEIVLGRCT YLIGSDGKPH QLTGDRLKEI TSTIIHEMAN SGLRTICVAY 660
  661 KTIIKKGTRD VEKTEIEFAE DSDIDWDDED AMYQNFTGIA ICGIQDPVRP EVPVAISKCK 720
  721 KAGITVRMVT GDNIMTARAI AMSCKILEPG EDFLALEGKE FNERIRDENG KVSQAKLDEI 780
  781 WPRLRVLARA QPADKYTLVK GIIDSKATPQ REIVAVTGDG TNDGPALKKA DVGFAMGIAG 840
  841 TDVAKEASDI ILTDDNFTSI VKAVMWGRNV YDSISKFLQF QLTVNVVAVI TAFVGAVTVS 900
  901 DSPLKAVHML WINLIMDTLA SLALATEQPT DELLERKPYG RKKSLISRTM VKNILCHALY 960
  961 QLIIIFVIFF YGDTIFGIKT GLYAPLFAPP SQHFTLVFNA FVMMTVFNEI NARKVHGERN1020
 1021 VFKGLASNRV FCVIWVTTFI AQIIIVQFGG AWFSTAPLTL QQWIVCLVLG FSTLIWGQIV1080
 1081 ATIPSKKLPK AWKVGKGEVQ PANLHINGDY NVRARSRAVT LRRSGKSLWV RGMFIIGNHL1140
 1141 RVLRAFGMEK SEKAAFGRTA PAMTAEAAER WRASYRKYRH QKHQEKKATA ETAESVKSAD1200
 1201 WAKEQKEKKK TFKQIKQVAR GKSLDKDSKK HHKKRKDQTN VDMEDIELN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle