YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE03598
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVTILGNNL TARHFVKYLG NCHQSVQLSL WTFDDSEYPE FENVSTCLRY HGMKNLPNAL  60
   61 LAADVVVNLH ECTDFSLLPD VAKLQMHNVE VVRSVLFHCN SPLVHLSTPF LQCSHRWPNV 120
  121 YEPERDPVVF KPQWPFPEYC ASKFEAEKLV KSAPNDCYIV RCVPTYGEGD DCSILTDLIY 180
  181 FSNDKTILFL GDDDGHMQMA YAGNAAVAIW SAVCRLLSQS TSLNLNESFE EELGDLLTSA 240
  241 ESSFRFHQES ERVFEKSKLE LYAIKEEDEN LEGYRARHNT VRTSIDVDSE SKTDIDENLT 300
  301 EEGEVFEQGD CTKQGFNFEI EDEPQSQNLD FSIINDSKFS KNDRVFEIFL INDETPKKTV 360
  361 YSTYGQLLYT GKRLRSAVQL SFIPLYYIYL LFCMVLQFTM KLFGPLKFAS LLPSPAFLYF 420
  421 YFHHWTFFNA TKSLLMLGYK PNFEFKECVN NCVKHYREFR KKDVRLFSWQ NSLTGNPKSF 480
  481 NLDIVH

Type	Start	End	Confidence
Non-Cytoplasmic	1	384	0.54
Transmembrane Helix	385	419	0.69
Cytoplasmic	420	486	0.54