YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE03597
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.88
Transmembrane Helix	21	42	0.87
Non-Cytoplasmic	43	199	0.99
Transmembrane Helix	200	221	0.92
Cytoplasmic	222	228	0.84
Transmembrane Helix	229	247	0.96
Non-Cytoplasmic	248	254	0.83
Transmembrane Helix	255	278	0.89
Cytoplasmic	279	286	0.89
Transmembrane Helix	287	309	0.91
Non-Cytoplasmic	310	320	0.83
Transmembrane Helix	321	340	0.96
Cytoplasmic	341	385	0.97
Transmembrane Helix	386	406	0.93
Non-Cytoplasmic	407	425	0.83
Transmembrane Helix	426	446	0.92
Cytoplasmic	447	454	0.89
Transmembrane Helix	455	475	0.95
Non-Cytoplasmic	476	482	0.74
Transmembrane Helix	483	506	0.88
Cytoplasmic	507	516	0.78
Transmembrane Helix	517	537	0.92
Non-Cytoplasmic	538	550	0.78
Transmembrane Helix	551	570	0.94
Cytoplasmic	571	599	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGRPAAGC CCFINNARFP ILILTTFCIA ALYSTLILFN LLTILDSEVE IRPVPGLDSL  60
   61 HGSSYKGYNR LKRELSESRI PSKVVRFDES TEDEGHPILP PTEKPAPVIT TETPTTRETE 120
  121 KPVPIFITNR PETTTVRAVR TTTKKVETTT SDDVVAREVE RTLKKLRDAE DGKSESIPEQ 180
  181 LFENVSNEPT ETLPLRLQRG LLFAASGLGV IFGSFVTINL IKKFGVRKVF SICMVQSTIL 240
  241 ILLFLYVQKR SYIFLLLTRF LLGFSFSSVF PVMGNLLIQW GPLKEQLIFI TSMFMFLSIG 300
  301 PVVSWPIAHY FHALEISLDS VYYIQCGTLA FLTLIWSIFY RDRPQDHPWV SGVELNKIVA 360
  361 GKVNELRSNR ALADAYTSLF RSLSAWSIWT SAFGLFSVTA FFSIYLPSLL ASPDVFVVEG 420
  421 LGIHSSFPFQ LLPLSCIIFS SLNVLFKPST KIVRILNFTA FAIGAILMIA IVLVASLQTK 480
  481 AGLFSLLLIS MLPFGLAIVA GFVRSLTVVG RVFAEQIVAM CAVPFGLAFS ILPMVVTYSV 540
  541 TENKLAEWMK VTMFLFFVLS AVAIEFAVFG RGKSASWAAS SWDPPCSFYK NAISSSDRF