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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: pgp-4
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIASEHVEL GSRPDKKKKK SRSSQGNSLS NLFRHSGCAD YLLLLGGLVL SAANGALLPF  60
   61 NSLIFEGITN VLMKGEAQWQ NGTFDYDTFS SGIQHYCLLY FLLGVLMFTC TYFSNACLFT 120
  121 MAERRLYCIR KHLLQSVLRQ DAKWFDENTV GGLTQKMSSG IEKIKDGIGD KIGVLVSGIA 180
  181 TFISGVALGF YMCWQLTLVM LVTVPLQLGS MYLSAKHLNR ATKNEMSAYS SAGGMANEVI 240
  241 AGIRTVIAFN AQPFEIERYG AQLAKARKMG IRKAIVLALC SAMPLFLMFV LMAGAFWYGA 300
  301 ILTSYGVATS GTTFGVFWAV ILGTRRLGEA APHMGAITGA RLAVNDIFKV IDHEPEINCT 360
  361 KQEGRRPDKV NGKLVFDNIQ FTYPTRPDVK ILKGVSFEVN PGETIALVGH SGCGKSTSIG 420
  421 LLMRFYNQCA GSIKLDGIPI EDYNIQWLRS TIGIVQQEPI IFLATVAENV RMGDDSITDK 480
  481 DIENACRQAN AHDFIGKLSE GYNTVIGAGA VQLSGGQKQR VAIARAIVRK PQILLLDEAT 540
  541 SALDTESERM VQTALDKASE GRTTLCIAHR LSTIRNASKI LVFDQGLIPE RGIHDQLIRQ 600
  601 NGIYANMVRA QEIEKAKDDT TQDDDELVEE DNYSISRRLS TSEEELRKSK SLLRDSTRFS 660
  661 QSMLSVTSQV PDWEMESARE EMIEEGAMEA SMMDIFRFAK PEKMNIVIAL IFTLIRGITW 720
  721 PAFSVVYGQL FKVFAEGGED LPVNALISSL WFVLLAVTSA VTTFISGSLL GKTGETMSSR 780
  781 LRMDVFKNIM QQDATYFDDP KHNVGNLTSR LATDSQNVQA AIDHRLAEVL NGVVSLFTGI 840
  841 AVAFWFGWSM APIGLITALL LVIAQSAVAQ YLKYRGPKDM ESAIEASRIV TESISNWKTV 900
  901 QALTKQEYMF HAFTAASKNP RKRAFTKGLW QSLSFALAGS FFLWNFAIAY MFGLWLISNN 960
  961 WTTPFAVFQV IEALNMASMS VMMAASYFPE YVRARISAGI MFTMIRQKAK IDNRGLTGET1020
 1021 PDIRGDISMK GVYFAYPNRN RQLILNNFNM SAQFGETVAL VGPSGCGKST SIQLIERYYD1080
 1081 AICGAVKIDD HDIRDISVKH LRHNIALVGQ EPTLFNLTIR ENITYGLENV SQEQVEKAAT1140
 1141 LANIHSFVEN LPEGYDTSVG ASGGRLSGGQ KQRIAIARAI VRNPKILLLD EATSALDTES1200
 1201 EKIVQEALDK ARLGRTCVVI AHRLSTIQNA DKIIVCRNGK AIEEGTHQTL LARRGLYYRL1260
 1261 VEKQST

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle