YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE03301
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	42	0.93
Non-Cytoplasmic	43	62	0.95
Transmembrane Helix	63	82	0.94
Cytoplasmic	83	89	0.79
Transmembrane Helix	90	113	0.82
Non-Cytoplasmic	114	120	0.80
Transmembrane Helix	121	138	0.90
Cytoplasmic	139	148	0.69
Transmembrane Helix	149	173	0.85
Non-Cytoplasmic	174	178	0.72
Transmembrane Helix	179	201	0.91
Cytoplasmic	202	217	0.93
Transmembrane Helix	218	241	0.91
Non-Cytoplasmic	242	249	0.79
Transmembrane Helix	250	272	0.94
Cytoplasmic	273	283	0.89
Transmembrane Helix	284	304	0.91
Non-Cytoplasmic	305	309	0.68
Transmembrane Helix	310	327	0.69
Cytoplasmic	328	341	0.62
Transmembrane Helix	342	360	0.78
Non-Cytoplasmic	361	368	0.57
Transmembrane Helix	369	388	0.94
Cytoplasmic	389	408	0.62
Transmembrane Helix	409	427	0.49
Non-Cytoplasmic	428	437	0.53
Transmembrane Helix	438	459	0.81
Cytoplasmic	460	516	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHCVARLHNT LHNFFNNREI NSITTTILIF ISLYISIITL LGENFLNPLA DHVNPVNATN  60
   61 EDVTVRSIFV IFILLVAGIF AAKISKALRL PPLFGCLALG IIIKNITVFD QFFVFPPFVE 120
  121 TMIRKVALVM IIVRWGLATD IHFLYENALM PVTIGLVTAI GEIIAVTIAS YFILNISFVM 180
  181 SIFCALILVT VSPAVTVPAM INFKEKQLGS LKRIPENILA ICCVDNLFCV ILFMVLSSII 240
  241 FTDAPIATTI LLNAGSIVFG CIGGIVLGWI LWRFPRSDAP HTQFARITLL GTICIAVVIG 300
  301 TYLIKYSCSG FLAALITSAM SAMQWKADNK EKLECVESTY KYIWDSFALP LLFICLGMKF 360
  361 DCSTLTWEIV FLCIAVIAIG LLVRTILVML VTLSSHINFK EQIVVALSLL PRATFQADLA 420
  421 PTLLLMATPF PDMAKDAALI LKAAILSVLI TAPIFDILLN LVGSKCLSQY NPQDAPAIEK 480
  481 NFDKTYMNGD HVDETIYAAR PKTYSEYRSE AVIERY