YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gnrr-6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDRQMEVDN STIVETVAPT YLISDYIEIA YLGLVLLFGV PANAVILQKL IKEMKMSNRD  60
   61 MVKSGFVMLK INLNITDLLI LTYSLGKLIW LITYKWIGGD YACRFYQMFS MFSLYSSSNI 120
  121 VMCIALDRLR NVIYANQIHT KTDKISTVSI LAYSSWLAAL VCSLPQFFLF QTIEVYPNFV 180
  181 QCSDIWQIRR HSQDDIAFFG KDSFVLTQTF ENSYNIAHLL LVFWGPLIVL IVTYAVIATK 240
  241 LTKYSLKAPG TQSMRRPMPT AADDLPKEVV VHVNVEDGLL KKEGSIKKVV RCCAEELITK 300
  301 QHRKKSNRRM RAKESTTTTS STSTRMPTWR KQMRSRVFRT TMLVILTHFL FWFPYNALGL 360
  361 MKYINQSMFE VLSANANIFK DLQILITLIN PFLYGFSTGN

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.94
Transmembrane Helix	29	47	0.96
Cytoplasmic	48	70	0.81
Transmembrane Helix	71	91	0.87
Non-Cytoplasmic	92	104	0.86
Transmembrane Helix	105	126	0.87
Cytoplasmic	127	146	0.88
Transmembrane Helix	147	169	0.92
Non-Cytoplasmic	170	215	0.97
Transmembrane Helix	216	238	0.92
Cytoplasmic	239	336	0.98
Transmembrane Helix	337	355	0.93
Non-Cytoplasmic	356	400	0.68